Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G113000.1 | Wheat | nucleus | 93.71 | 92.18 |
| TraesCS4D01G192400.1 | Wheat | nucleus | 93.71 | 91.88 |
| TraesCS4B01G191200.1 | Wheat | nucleus | 93.71 | 91.88 |
| Os03t0296000-00 | Rice | nucleus | 26.82 | 78.64 |
| OQU92760 | Sorghum | nucleus | 75.5 | 69.51 |
| Zm00001d028777_P001 | Maize | nucleus | 72.19 | 68.34 |
| HORVU4Hr1G055640.1 | Barley | cytosol | 6.62 | 46.51 |
| Solyc03g059200.1.1 | Tomato | nucleus | 39.07 | 44.87 |
| GSMUA_Achr3P10060_001 | Banana | nucleus | 43.38 | 40.94 |
| PGSC0003DMT400022009 | Potato | nucleus | 38.41 | 39.59 |
| VIT_17s0000g05400.t01 | Wine grape | nucleus | 39.74 | 39.22 |
| KRH63439 | Soybean | nucleus | 31.79 | 36.09 |
| AT3G28470.1 | Thale cress | nucleus | 37.42 | 35.65 |
| HORVU3Hr1G068550.1 | Barley | nucleus | 25.5 | 35.32 |
| Bra025337.1-P | Field mustard | nucleus | 37.42 | 34.98 |
| CDX86430 | Canola | nucleus | 37.42 | 34.98 |
| HORVU4Hr1G087730.1 | Barley | nucleus | 25.17 | 34.86 |
| KRG93460 | Soybean | nucleus | 37.75 | 33.04 |
| HORVU7Hr1G096190.1 | Barley | nucleus | 28.15 | 32.69 |
| HORVU2Hr1G081720.2 | Barley | nucleus | 33.44 | 32.37 |
| KRH18536 | Soybean | endoplasmic reticulum | 38.08 | 30.67 |
| HORVU3Hr1G019590.2 | Barley | nucleus | 26.16 | 29.37 |
| VIT_14s0066g02180.t01 | Wine grape | nucleus | 41.72 | 28.9 |
| HORVU5Hr1G098540.1 | Barley | nucleus | 28.81 | 27.97 |
| KRH54481 | Soybean | nucleus | 30.13 | 27.58 |
| HORVU5Hr1G063410.1 | Barley | nucleus | 27.48 | 27.57 |
| HORVU1Hr1G061220.1 | Barley | nucleus | 28.48 | 27.13 |
| HORVU1Hr1G051980.2 | Barley | nucleus | 21.19 | 25.91 |
| HORVU6Hr1G083250.1 | Barley | nucleus | 30.46 | 25.34 |
| HORVU2Hr1G010450.2 | Barley | nucleus | 28.48 | 24.5 |
| Solyc03g113530.2.1 | Tomato | nucleus | 28.15 | 23.94 |
| PGSC0003DMT400062839 | Potato | nucleus | 22.52 | 22.15 |
| HORVU1Hr1G045090.1 | Barley | nucleus | 20.53 | 20.67 |
| HORVU3Hr1G063460.4 | Barley | nucleus | 18.87 | 18.33 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 36.76 | 16.97 |
| HORVU1Hr1G084170.4 | Barley | nucleus | 13.91 | 13.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | UniProt:A0A287P4Y1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0048658 | GO:GO:0052545 |
| GO:GO:0055046 | EnsemblPlantsGene:HORVU4Hr1G055680 | EnsemblPlants:HORVU4Hr1G055680.1 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF653 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000B461801 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:467095873..467097563
Molecular Weight (calculated)
32339.7 Da
IEP (calculated)
5.732
GRAVY (calculated)
-0.437
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: CCDKANVKKG PWTAEEDAKL LAYTSNHGTG NWTSVPQRAG LKRCGKSCRL RYTNYLRPNL KHENFTQEEE ELIVTLHAML GSRWSLIANQ LPGRTDNDVK
101: NYWNTKLSKK LRQRGIDPIT HRPIADLMQS IGTLSIRPPP SAAGASSSSY LPVNPAAAPG LQLLHDDMPY HAALNHHQQQ QVITLLDADA PGAAASPDHQ
201: LKWSDFLDAA ALEAAPQVVL GQYHEAAVAG GGAHAYGDTD STAANGVGGD GEDSAASAFI DAMLDSDKEM GVDQLIADLL ADPAYYYGGS SSSSKSELGW
301: GC
101: NYWNTKLSKK LRQRGIDPIT HRPIADLMQS IGTLSIRPPP SAAGASSSSY LPVNPAAAPG LQLLHDDMPY HAALNHHQQQ QVITLLDADA PGAAASPDHQ
201: LKWSDFLDAA ALEAAPQVVL GQYHEAAVAG GGAHAYGDTD STAANGVGGD GEDSAASAFI DAMLDSDKEM GVDQLIADLL ADPAYYYGGS SSSSKSELGW
301: GC
001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY
Arabidopsis Description
MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.