CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028777_P001	Maize	nucleus	85.67	88.09
Os03t0296000-00	Rice	nucleus	26.22	83.5
TraesCS4D01G192400.1	Wheat	nucleus	71.95	76.62
TraesCS4B01G191200.1	Wheat	nucleus	71.04	75.65
TraesCS4A01G113000.1	Wheat	nucleus	70.73	75.57
HORVU4Hr1G055680.1	Barley	nucleus	69.51	75.5
Solyc03g059200.1.1	Tomato	nucleus	36.89	46.01
GSMUA_Achr3P10060_001	Banana	nucleus	41.46	42.5
PGSC0003DMT400022009	Potato	nucleus	37.5	41.98
VIT_17s0000g05400.t01	Wine grape	nucleus	36.59	39.22
KRH63439	Soybean	nucleus	29.88	36.84
EES00143	Sorghum	nucleus	27.13	36.33
AT3G28470.1	Thale cress	nucleus	34.76	35.96
KRG93460	Soybean	nucleus	37.2	35.36
Bra025337.1-P	Field mustard	nucleus	34.45	34.98
CDX86430	Canola	nucleus	34.45	34.98
OQU79721	Sorghum	nucleus	24.7	33.33
KRH18536	Soybean	endoplasmic reticulum	37.8	33.07
EES18637	Sorghum	nucleus	27.74	31.49
VIT_14s0066g02180.t01	Wine grape	nucleus	39.63	29.82
EES14801	Sorghum	nucleus	28.96	29.69
EES12341	Sorghum	nucleus	33.54	29.65
KRH54481	Soybean	nucleus	29.27	29.09
EER90818	Sorghum	nucleus	28.05	28.13
KXG35154	Sorghum	nucleus	26.52	27.19
EES01384	Sorghum	nucleus	26.22	27.04
EES05913	Sorghum	nucleus	31.71	25.81
Solyc03g113530.2.1	Tomato	nucleus	27.44	25.35
OQU87345	Sorghum	nucleus	25.61	25.23
EES10507	Sorghum	nucleus	27.13	25.21
EER98942	Sorghum	nucleus	27.44	24.39
KXG38237	Sorghum	nucleus	18.6	23.83
PGSC0003DMT400062839	Potato	nucleus	21.04	22.48
CDX85201	Canola	endoplasmic reticulum, vacuole	33.54	16.82
OQU75617	Sorghum	nucleus	12.8	13.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8081124	UniProt:A0A1Z5S9Y7	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0048658
GO:GO:0052545	GO:GO:0055046	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlants:OQU92760
ProteinID:OQU92760	ProteinID:OQU92760.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF653
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3001G404400	SUPFAM:SSF46689	UniParc:UPI0001A82BA6	RefSeq:XP_002465411.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:68915238..68917810

Molecular Weight (calculated)

34464.3 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.380

Length

328 amino acids

Sequence
(BLAST)

001: MGRPPCCDKA NVKKGPWTPE EDAKLLAYTS THGTGNWTNV PQRAGLKRCG KSCRLRYTNY LRPNLKHENF TQEEEDLIVT LHAMLGSRWS LIANQLPGRT
101: DNDVKNYWNT KLSKKLRQRG IDPITHRPIA DLMHSIGALA IRPPQPASSS PNGGYLPAPA LPLVHDVAYH AAGMLPPKTE QQQVVIARVD ADAPASPTTT
201: EHGQGQQLKW SDFLADDAAA AAAAAEAQQQ QVVLGQYHHE ASAVGAGSGV AVYGAGSSSS AAAAGGDVGG GGGGDDGAAA FIDAILDCDK ETGVDQLIAE
301: LLADPAYYAG SSSSSSEMGW GMGLLNAD

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.