Factsheet for TraesCS4A01G113000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G192400.1	Wheat	nucleus	96.09	95.78
TraesCS4B01G191200.1	Wheat	nucleus	96.09	95.78
HORVU4Hr1G055680.1	Barley	nucleus	92.18	93.71
Os03t0296000-00	Rice	nucleus	27.69	82.52
OQU92760	Sorghum	nucleus	75.57	70.73
Zm00001d028777_P001	Maize	nucleus	71.99	69.28
TraesCS3A01G264900.1	Wheat	nucleus	16.94	58.43
Solyc03g059200.1.1	Tomato	nucleus	39.74	46.39
GSMUA_Achr3P10060_001	Banana	nucleus	43.65	41.88
PGSC0003DMT400022009	Potato	nucleus	39.09	40.96
VIT_17s0000g05400.t01	Wine grape	nucleus	40.39	40.52
KRH63439	Soybean	nucleus	32.25	37.22
AT3G28470.1	Thale cress	nucleus	37.13	35.96
Bra025337.1-P	Field mustard	nucleus	36.81	34.98
CDX86430	Canola	nucleus	36.81	34.98
TraesCS2A01G331200.1	Wheat	nucleus	39.41	34.38
KRG93460	Soybean	nucleus	38.11	33.91
TraesCS7A01G414300.1	Wheat	nucleus	29.64	33.58
TraesCS3A01G108000.1	Wheat	nucleus	28.01	32.21
TraesCS5A01G534400.1	Wheat	nucleus	27.69	31.72
KRH18536	Soybean	endoplasmic reticulum	38.44	31.47
TraesCS3A01G286600.1	Wheat	nucleus	28.66	30.24
TraesCS5A01G217900.1	Wheat	nucleus	29.32	29.13
TraesCS5A01G405800.1	Wheat	nucleus	29.32	28.94
VIT_14s0066g02180.t01	Wine grape	nucleus	40.72	28.67
TraesCS1A01G252600.1	Wheat	nucleus	29.64	28.35
KRH54481	Soybean	nucleus	30.29	28.18
TraesCS1A01G379700.1	Wheat	nucleus	26.71	26.54
TraesCS6A01G344700.1	Wheat	nucleus	31.27	26.3
Solyc03g113530.2.1	Tomato	nucleus	29.64	25.63
TraesCS2A01G069300.1	Wheat	nucleus	28.34	25.0
TraesCS1A01G201100.1	Wheat	nucleus	20.85	24.52
PGSC0003DMT400062839	Potato	nucleus	22.15	22.15
TraesCS1A01G169400.1	Wheat	nucleus	19.22	20.07
CDX85201	Canola	endoplasmic reticulum, vacuole	36.16	16.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0048658	GO:GO:0052545	GO:GO:0055046
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS4A01G113000	EnsemblPlants:TraesCS4A01G113000.1
TIGR:cd00167	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:137523309..137524833

Molecular Weight (calculated)

32692.2 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.443

Length

307 amino acids

Sequence
(BLAST)

001: MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS NHGTGNWTSV PQRAGLKRCG KSCRLRYTNY LRPNLKHENF TQEEEELIVT LHAMLGSRWS LIANQLPGRT
101: DNDVKNYWNT KLSKKLRQRG IDPITHRPIA DLMQSIGTLP IRPPPSAAGA SSSSYIPVNP AAAPGLQPLH DDVKYHAVLN HHQQQVITLL DPDAPGAAAS
201: PDHQLKWSDF LADDAAAFEA APQVVLGQYQ EAAVAGGGAA YGDTDSIAAD GVGGGGEDSA ASAFIDAMLD SDKKMGVDQL IADLLADPAY YYGGGSSSST
301: SELGRGG

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.