Factsheet for TraesCS1A01G169400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G045090.1	Barley	nucleus	86.05	84.33
KXG38237	Sorghum	nucleus	54.08	62.11
Zm00001d013931_P001	Maize	nucleus	54.08	58.24
TraesCS1A01G201100.1	Wheat	nucleus	44.56	50.19
TraesCS3A01G264900.1	Wheat	nucleus	12.59	41.57
GSMUA_Achr4P01050_001	Banana	nucleus	21.77	28.32
GSMUA_Achr1P04910_001	Banana	nucleus	22.11	26.75
TraesCS7A01G414300.1	Wheat	nucleus	23.81	25.83
VIT_04s0008g00620.t01	Wine grape	nucleus	23.13	25.76
GSMUA_Achr7P25060_001	Banana	nucleus	24.83	25.0
TraesCS5A01G405800.1	Wheat	nucleus	25.51	24.12
TraesCS5A01G534400.1	Wheat	nucleus	21.77	23.88
TraesCS3A01G108000.1	Wheat	nucleus	21.09	23.22
KRH15488	Soybean	nucleus	23.13	22.52
TraesCS5A01G217900.1	Wheat	nucleus	23.47	22.33
KRH05529	Soybean	nucleus	23.13	22.01
TraesCS1A01G252600.1	Wheat	nucleus	23.81	21.81
TraesCS2A01G069300.1	Wheat	nucleus	24.83	20.98
TraesCS3A01G286600.1	Wheat	nucleus	20.75	20.96
TraesCS1A01G379700.1	Wheat	nucleus	21.77	20.71
TraesCS6A01G344700.1	Wheat	nucleus	24.49	19.73
TraesCS4A01G113000.1	Wheat	nucleus	20.07	19.22
TraesCS2A01G331200.1	Wheat	nucleus	22.11	18.47

Protein Annotations

EnsemblPlants:TraesCS1A01G169400.1	EnsemblPlantsGene:TraesCS1A01G169400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF933	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:302195805..302198029

Molecular Weight (calculated)

31935.9 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.450

Length

294 amino acids

Sequence
(BLAST)

001: MRGSMMKKGK WSKEEDNLIK NHIEKYGIGC SWQGLSNTLG LRRCGRSCRS RWLNYLRPGL KHGNFTPAED RIICEMYRKK GSCWSVIAAE LPGRTDLAIK
101: NYWNSTLKKQ LPRKARSRRR RRTGGTSSSC DATSLDLALV VYDEESTSGT ARDLPLVVCN EDDSATATTA GHLPLLAYNV NEASSTAGSS SSHAGAVSAG
201: SPVQARAQPP PLPAAAANEE PIAAVPVSGP VKMEQRTPPP PADETSEEMD VDCRLISPLP LGLMELPDLP SIAMDLPHIA GFDDIDSLLS YFDH

Best Arabidopsis Sequence Match ( AT4G37780.1 )
(BLAST)

001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE

Arabidopsis Description

MYB87Transcription factor MYB87 [Source:UniProtKB/Swiss-Prot;Acc:F4JSU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.