Factsheet for TraesCS6A01G344700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G327300.1	Wheat	nucleus	99.18	99.18
TraesCS6B01G377400.1	Wheat	nucleus	97.81	98.08
Zm00001d018319_P001	Maize	nucleus	23.29	94.44
HORVU6Hr1G083250.1	Barley	nucleus	93.42	93.94
TraesCS3A01G264900.1	Wheat	nucleus	18.08	74.16
EES05913	Sorghum	nucleus	69.32	62.78
Zm00001d052069_P001	Maize	nucleus	67.12	61.87
TraesCS1A01G252600.1	Wheat	nucleus	39.73	45.17
VIT_11s0052g01490.t01	Wine grape	nucleus	43.01	43.01
TraesCS7A01G414300.1	Wheat	nucleus	30.41	40.96
TraesCS5A01G217900.1	Wheat	nucleus	34.52	40.78
Os02t0786400-00	Rice	extracellular	48.22	40.37
CDY25898	Canola	nucleus	35.62	40.12
CDY11860	Canola	nucleus	36.71	40.12
AT5G57620.1	Thale cress	nucleus	36.44	39.94
Bra006811.1-P	Field mustard	nucleus	36.16	39.88
CDX88631	Canola	nucleus	36.16	39.88
Bra020428.1-P	Field mustard	nucleus	35.89	39.46
TraesCS5A01G405800.1	Wheat	nucleus	33.42	39.23
KRH18986	Soybean	nucleus	38.08	38.4
PGSC0003DMT400048261	Potato	nucleus	38.36	38.04
KRH02902	Soybean	nucleus	37.26	37.26
TraesCS2A01G069300.1	Wheat	nucleus	33.42	35.06
TraesCS3A01G108000.1	Wheat	nucleus	25.48	34.83
TraesCS1A01G379700.1	Wheat	nucleus	28.77	33.98
Solyc07g006750.2.1	Tomato	mitochondrion	38.9	33.49
TraesCS5A01G534400.1	Wheat	nucleus	24.38	33.21
TraesCS3A01G286600.1	Wheat	nucleus	25.21	31.62
TraesCS4A01G113000.1	Wheat	nucleus	26.3	31.27
TraesCS1A01G201100.1	Wheat	nucleus	20.55	28.74
TraesCS2A01G331200.1	Wheat	nucleus	24.38	25.28
TraesCS1A01G169400.1	Wheat	nucleus	19.73	24.49

Protein Annotations

EnsemblPlants:TraesCS6A01G344700.1	EnsemblPlantsGene:TraesCS6A01G344700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF946	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:578885423..578887947

Molecular Weight (calculated)

38759.7 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.356

Length

365 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKKGPWSPE EDAKLKAYID ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGK RAPSRRLQRA SQDAPMPYSY LAAGGGGASS SGNANGTTAA LSSSALERIQ LHMRLQGLYS AFGCGASNAP PQWPKLEPPT
201: DAVAMTTVSH GHSLAATDVV EAEQQLNPSA GASYDMPVPG SFEERSASKL GFGSAAGEVA GVASTVEMSS GSMVGGGFGY GHVDELYDFL YSKQLAAAGA
301: FQGGVPPLPE LQCPDGGAVV GADEKFSTWM ASCDHYVPTT GGQQLQLQAG GNSMNLQDFV LGYDQ

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.