Factsheet for TraesCS1A01G379700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G387100.1	Wheat	nucleus	94.82	95.13
TraesCS1B01G401700.1	Wheat	nucleus	93.85	92.95
TraesCS3A01G264900.1	Wheat	nucleus	25.24	87.64
GSMUA_Achr5P09280_001	Banana	nucleus	31.39	50.52
Zm00001d038930_P001	Maize	nucleus	35.92	42.37
EES18637	Sorghum	nucleus	36.89	39.45
TraesCS5A01G534400.1	Wheat	nucleus	32.36	37.31
TraesCS3A01G108000.1	Wheat	nucleus	31.39	36.33
TraesCS7A01G414300.1	Wheat	nucleus	31.72	36.16
TraesCS3A01G286600.1	Wheat	nucleus	33.66	35.74
TraesCS5A01G217900.1	Wheat	nucleus	33.01	33.01
TraesCS5A01G405800.1	Wheat	nucleus	31.72	31.51
TraesCS1A01G252600.1	Wheat	nucleus	32.04	30.84
TraesCS6A01G344700.1	Wheat	nucleus	33.98	28.77
TraesCS2A01G069300.1	Wheat	nucleus	32.04	28.45
TraesCS4A01G113000.1	Wheat	nucleus	26.54	26.71
TraesCS2A01G331200.1	Wheat	nucleus	27.83	24.43
TraesCS1A01G201100.1	Wheat	nucleus	19.42	22.99
TraesCS1A01G169400.1	Wheat	nucleus	20.71	21.77

Protein Annotations

EnsemblPlants:TraesCS1A01G379700.1	EnsemblPlantsGene:TraesCS1A01G379700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF694	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:551592118..551593136

Molecular Weight (calculated)

32905.2 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.290

Length

309 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA RVKRGPWSPE EDEQLRSYVR ANGVGGNWIA LPHKAGLNRC GKSCRLRWLN YLRPDIRHGG YTEQEDRVIC SLYASIGSRW SIIASKLPGR
101: TDNDVKNYWN TKLKKKAMPM PMPMPMPGPH YHHHAGLGAF SAPATPSGPA GSWSQCVPST LQPAALSPAA SGSSVDTTSS GGDMCFAPAG MYQPHHPMQG
201: FVHVDSSPQT VLAPMPLDVP AATGIWAPSM PAASDVGGVA LEDAFLADLG AYGDLLLGGF GGQLLQDNKA TAAMELPGAC YFPNMAEMWA ADHAHAHAKP
301: PQGLCNTFT

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.