Factsheet for TraesCS1A01G252600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G265400.1	Wheat	nucleus	94.39	95.28
TraesCS1D01G252300.1	Wheat	nucleus	58.57	92.61
HORVU1Hr1G061220.1	Barley	nucleus	90.03	91.17
TraesCS3A01G264900.1	Wheat	nucleus	19.94	71.91
Os08t0248700-01	Rice	nucleus	69.78	70.89
EES14801	Sorghum	nucleus	67.91	68.12
Zm00001d050185_P002	Maize	nucleus	65.73	63.17
TraesCS5A01G217900.1	Wheat	nucleus	41.43	43.04
VIT_11s0052g01490.t01	Wine grape	nucleus	48.29	42.47
GSMUA_Achr7P19530_001	Banana	nucleus	42.37	39.88
TraesCS6A01G344700.1	Wheat	nucleus	45.17	39.73
CDY25898	Canola	nucleus	39.88	39.51
AT5G57620.1	Thale cress	nucleus	40.5	39.04
Bra020428.1-P	Field mustard	nucleus	40.19	38.86
TraesCS7A01G414300.1	Wheat	nucleus	32.71	38.75
CDX88631	Canola	nucleus	39.88	38.67
Bra006811.1-P	Field mustard	nucleus	39.88	38.67
CDY11860	Canola	nucleus	40.19	38.62
TraesCS5A01G405800.1	Wheat	nucleus	35.2	36.33
TraesCS3A01G108000.1	Wheat	nucleus	28.04	33.71
TraesCS5A01G534400.1	Wheat	nucleus	27.73	33.21
TraesCS1A01G379700.1	Wheat	nucleus	30.84	32.04
TraesCS3A01G286600.1	Wheat	nucleus	28.66	31.62
TraesCS2A01G069300.1	Wheat	nucleus	33.33	30.75
TraesCS4A01G113000.1	Wheat	nucleus	28.35	29.64
TraesCS1A01G201100.1	Wheat	nucleus	23.05	28.35
TraesCS2A01G331200.1	Wheat	nucleus	28.97	26.42
TraesCS1A01G169400.1	Wheat	nucleus	21.81	23.81

Protein Annotations

EnsemblPlants:TraesCS1A01G252600.1	EnsemblPlantsGene:TraesCS1A01G252600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF946	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:444136354..444137548

Molecular Weight (calculated)

35426.2 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.713

Length

321 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN YLRPNIKHGD FTPEEDSTIC KLYISIGSRW SIIAAQLPGR
101: TDNDVKNYWN TKLKKRLLGG RRKDRGASTQ QHRQGELDGA NNDGEQQPLS ASAMERIQLC MQLQEMQNPL SSIGNHNNPL HLWQPGSHHQ IAATYSNNSN
201: NNSNSSRSSS LDVTVAAEQG QSSSLNDQHL GGQQQLEMAA AADGLASPSS AGNSNMVTIE AELQELLYST TTTTTTDSVV TQQGGVDWWS YDQGKSPVHC
301: WDFAPETSSV LQDYAAVVYD M

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.