Factsheet for Zm00001d050185_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018319_P001	Maize	nucleus	23.95	88.89
EES14801	Sorghum	nucleus	75.75	79.06
TraesCS1D01G252300.1	Wheat	nucleus	41.92	68.97
Os08t0248700-01	Rice	nucleus	64.07	67.72
TraesCS1A01G252600.1	Wheat	nucleus	63.17	65.73
TraesCS1B01G265400.1	Wheat	nucleus	62.57	65.72
HORVU1Hr1G061220.1	Barley	nucleus	61.98	65.3
VIT_11s0052g01490.t01	Wine grape	nucleus	44.91	41.1
GSMUA_Achr7P19530_001	Banana	nucleus	41.32	40.47
Zm00001d005784_P001	Maize	nucleus	41.92	40.46
Zm00001d038930_P001	Maize	nucleus	31.14	39.69
Zm00001d039496_P001	Maize	nucleus	29.64	39.6
Zm00001d020569_P001	Maize	nucleus	43.71	39.57
Zm00001d034207_P001	Maize	nucleus	35.33	37.58
Bra020428.1-P	Field mustard	nucleus	37.13	37.35
CDY25898	Canola	nucleus	36.23	37.35
AT5G57620.1	Thale cress	nucleus	37.13	37.24
CDX88631	Canola	nucleus	36.83	37.16
Bra006811.1-P	Field mustard	nucleus	36.83	37.16
CDY11860	Canola	nucleus	37.13	37.13
Zm00001d052069_P001	Maize	nucleus	43.41	36.62
Zm00001d043837_P001	Maize	nucleus	34.43	35.94
Zm00001d005307_P001	Maize	nucleus	31.14	35.25
Zm00001d013164_P002	Maize	nucleus	36.23	34.57
Zm00001d011614_P001	Maize	nucleus	33.23	34.05
Zm00001d004126_P001	Maize	nucleus	33.53	31.11
Zm00001d011739_P001	Maize	nucleus	26.65	30.69
Zm00001d043611_P001	Maize	nucleus	28.14	29.75
Zm00001d028777_P001	Maize	nucleus	28.14	29.47
Zm00001d013931_P001	Maize	nucleus	22.75	27.84
Zm00001d025664_P001	Maize	nucleus	26.35	24.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:541729	ProteinID:AQK52078.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7TZ48	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000221813E	EnsemblPlantsGene:Zm00001d050185	EnsemblPlants:Zm00001d050185_P002	EnsemblPlants:Zm00001d050185_T002	SEG:seg

Description

MYB-transcription factor 108Putative MYB DNA-binding domain superfamily protein

Coordinates

chr4:+:71478061..71479297

Molecular Weight (calculated)

35859.7 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.469

Length

334 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKKGPWSPE EDAMLKSYIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN YLRPNIKHGD FTPEEDGVIC SLYISIGSRW SIIAAQLPGR
101: TDNDVKNYWN TKLKKRLLGR RKDHRHHHHS AADAAATGES TNDGEPAAAL SASAMERIQL CMQLQSTHHQ HHPLPLMWPG CNVVSGSGVA STQSNNSFNS
201: NGSSSSVTVA EQGQLMNDQQ HLMTAQLEAG AAAAAAIDNG LAASPSSAEN SNIIVSMEAE LQELLYGGAA DDGSRGGKAV DGGGGVVQQV DVAEWWSYDD
301: QQGKSSSSPV AVGCWDFTPE PNTAFLDYAS VYDI

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.