Factsheet for Zm00001d004126_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018319_P001	Maize	nucleus	20.56	82.22
EES10507	Sorghum	nucleus	79.17	80.74
HORVU2Hr1G010450.2	Barley	nucleus	57.22	58.69
TraesCS2A01G069300.1	Wheat	nucleus	56.11	58.05
TraesCS2D01G068000.1	Wheat	nucleus	56.11	57.88
TraesCS2B01G082400.1	Wheat	nucleus	55.83	57.27
KRH26521	Soybean	nucleus	37.5	39.71
Zm00001d039496_P001	Maize	nucleus	27.22	39.2
KRH22841	Soybean	nucleus	36.94	39.12
Zm00001d038930_P001	Maize	nucleus	27.5	37.79
KRH25089	Soybean	nucleus	33.06	37.78
Solyc06g074910.2.1	Tomato	nucleus	31.67	37.75
Zm00001d005307_P001	Maize	nucleus	30.0	36.61
KRH30589	Soybean	nucleus	33.06	36.17
KRH41459	Soybean	nucleus	19.72	35.86
Zm00001d043837_P001	Maize	nucleus	31.39	35.31
Zm00001d034207_P001	Maize	nucleus	30.56	35.03
Solyc06g074920.1.1	Tomato	nucleus	28.61	34.92
Zm00001d050185_P002	Maize	nucleus	31.11	33.53
Zm00001d005784_P001	Maize	nucleus	31.67	32.95
Zm00001d052069_P001	Maize	nucleus	35.83	32.58
Zm00001d011614_P001	Maize	nucleus	29.17	32.21
Zm00001d013164_P002	Maize	nucleus	31.11	32.0
Zm00001d011739_P001	Maize	nucleus	25.56	31.72
Zm00001d020569_P001	Maize	nucleus	32.22	31.44
Zm00001d043611_P001	Maize	nucleus	25.56	29.11
PGSC0003DMT400020979	Potato	nucleus	15.56	28.14
Zm00001d028777_P001	Maize	nucleus	24.72	27.9
Zm00001d013931_P001	Maize	nucleus	20.0	26.37
Zm00001d025664_P001	Maize	nucleus	23.06	23.31

Protein Annotations

EnsemblPlants:Zm00001d004126_P001	EnsemblPlants:Zm00001d004126_T001	EnsemblPlantsGene:Zm00001d004126	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF687	PFAM:PF00249	PFscan:PS51294	ProteinID:ONM18491.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0008435CA8	UniProt:A0A1D6EE36	MapMan:15.5.2.1	:

Description

Transcription factor RAX1

Coordinates

chr2:+:84727345..84729782

Molecular Weight (calculated)

39641.5 Da

IEP (calculated)

7.398

GRAVY (calculated)

-0.794

Length

360 amino acids

Sequence
(BLAST)

001: MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNIKHGE FTETEDRVIC SMYASIGSRW SIIASQLPGR
101: TDNDIKNYWN TKLKKKLLGS SAAPHPHRAP RQQQQQQHHH HRPGLNLMLQ QTLPSLPQLA TYNSFFSGAG GGALHHDDPI IPALALPPPH QDYMLSPGGG
201: AGLGIPTSLL HAQQQQQFQQ QHQQHVVKEE SGSMIVFGRD QQSCSSSDGG GAHSQHQPQY GNGHGKELSF DGYLFGYSNG GSGMEHDNCG RLMQQLQDAH
301: QQQAHQHLVP VEYNYEEIKQ LLMSTAAADT LHAAGSHDDD DDNGGIEGFG GSQGNKVTMM

Best Arabidopsis Sequence Match ( AT5G65790.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV

Arabidopsis Description

ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.