Factsheet for Zm00001d043837_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G264900.1	Wheat	nucleus	24.69	88.76
OQU87345	Sorghum	nucleus	85.62	82.28
Zm00001d018319_P001	Maize	nucleus	21.25	75.56
Zm00001d011614_P001	Maize	nucleus	76.56	75.15
TraesCS3D01G265100.1	Wheat	nucleus	61.88	65.78
TraesCS3B01G298200.1	Wheat	nucleus	61.56	65.67
Os01t0685400-01	Rice	nucleus	40.94	55.98
GSMUA_Achr5P09280_001	Banana	nucleus	31.88	53.12
Zm00001d038930_P001	Maize	nucleus	39.06	47.71
Zm00001d039496_P001	Maize	nucleus	32.81	42.0
HORVU3Hr1G063460.4	Barley	nucleus	35.0	36.01
Zm00001d011739_P001	Maize	nucleus	31.88	35.17
Zm00001d050185_P002	Maize	nucleus	35.94	34.43
Zm00001d034207_P001	Maize	nucleus	33.44	34.08
Zm00001d005307_P001	Maize	nucleus	30.31	32.88
Zm00001d004126_P001	Maize	nucleus	35.31	31.39
Zm00001d043611_P001	Maize	nucleus	30.62	31.01
Zm00001d005784_P001	Maize	nucleus	33.44	30.92
Zm00001d013164_P002	Maize	nucleus	33.75	30.86
Zm00001d052069_P001	Maize	nucleus	37.5	30.3
Zm00001d020569_P001	Maize	nucleus	33.75	29.27
Zm00001d013931_P001	Maize	nucleus	23.44	27.47
Zm00001d028777_P001	Maize	nucleus	26.56	26.65
Zm00001d025664_P001	Maize	nucleus	26.25	23.6

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103651344	MapMan:15.5.2.1	UniProt:A0A1D6NFD2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	ProteinID:ONM39185.1
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF694	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0004DEB910	EnsemblPlantsGene:Zm00001d043837	EnsemblPlants:Zm00001d043837_P001	EnsemblPlants:Zm00001d043837_T001	SEG:seg

Description

Transcription factor MYB36

Coordinates

chr3:-:211320510..211321978

Molecular Weight (calculated)

33934.9 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.362

Length

320 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT SVKRGPWSPE EDDLLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN YLRPDIKHGG YTEQEDRVIC SLYSSIGSRW SIIASKLPGR
101: TDNDVKNYWN TKLKKKAIAM QQQQQQQQEY YQQQHSSGGR GRRAAAAAAA PRSQCASVQP SPASASSAVT TASASDACSF GAMYPSPSAL QAAPVLARYD
201: STAAAPAPLS LPQQASSLAA EFVPPAPPPV GASWAGGLPL DDMFLPELLG DSEFPPGDGD FFGAGAGAGL LAPLLLQDRF PAASLQELSA CYFPNAPAEM
301: WAAADHAHAK PPAGLCHSLT

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.