CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G264900.1	Wheat	nucleus	24.02	89.89
Zm00001d043837_P001	Maize	nucleus	82.28	85.62
Zm00001d011614_P001	Maize	nucleus	75.98	77.61
TraesCS3D01G265100.1	Wheat	nucleus	60.06	66.45
TraesCS3B01G298200.1	Wheat	nucleus	59.76	66.33
Os01t0685400-01	Rice	nucleus	40.24	57.27
GSMUA_Achr5P09280_001	Banana	nucleus	31.23	54.17
EES18637	Sorghum	nucleus	38.74	44.64
EES00143	Sorghum	nucleus	31.83	43.27
HORVU3Hr1G063460.4	Barley	nucleus	36.34	38.91
EES14801	Sorghum	nucleus	33.63	35.0
OQU79721	Sorghum	nucleus	25.53	34.98
EER90818	Sorghum	nucleus	34.23	34.86
EES01384	Sorghum	nucleus	30.63	32.08
EES10507	Sorghum	nucleus	33.93	32.01
KXG35154	Sorghum	nucleus	29.13	30.31
EES05913	Sorghum	nucleus	35.44	29.28
EER98942	Sorghum	nucleus	32.43	29.27
KXG38237	Sorghum	nucleus	19.82	25.78
OQU92760	Sorghum	nucleus	25.23	25.61
EES12341	Sorghum	nucleus	25.23	22.64
OQU75617	Sorghum	nucleus	14.41	15.29

Protein Annotations

EnsemblPlants:OQU87345	EnsemblPlantsGene:SORBI_3003G260300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF694	PFAM:PF00249	PFscan:PS51294	ProteinID:OQU87345	ProteinID:OQU87345.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0003C66AE1	UniProt:A0A1W0VZ15	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr3:+:59812780..59814750

Molecular Weight (calculated)

35667.8 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.500

Length

333 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT SVKRGPWSPE EDELLRSYVH NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN YLRPDIKHGG YTEQEDRIIC SLYNSIGSRW SIIASKLPGR
101: TDNDVKNYWN TKLKKKAIAN MQQQQEEYYH HHQQHSSGGG RGRRGGAAAA VTPRAAPRSQ QCASSMQPSP ASASSAVTTA SASDACSFGA MYPSPSTTTL
201: QAAAPVLARY DGTAPAPPLP PPPPQQQQQQ QASALAEFSP APAPATAISG TWAAGLPLDD MFLPELLGDS EFPPGGDFFG TGFAPLLLQD RAASASLQEL
301: SACYFPNAQA EMWAAADHHV HVKPPAGLCH SLT

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.