CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039496_P001	Maize	nucleus	87.76	86.0
TraesCS3D01G109800.1	Wheat	nucleus	73.06	67.04
TraesCS3B01G126800.1	Wheat	nucleus	73.47	66.67
TraesCS3A01G108000.1	Wheat	nucleus	71.43	65.54
HORVU3Hr1G019590.2	Barley	nucleus	70.2	63.94
Os01t0191900-01	Rice	nucleus	67.35	62.5
EES18637	Sorghum	nucleus	45.31	38.41
OQU79721	Sorghum	nucleus	35.51	35.8
OQU87345	Sorghum	nucleus	43.27	31.83
EES01384	Sorghum	nucleus	41.22	31.76
EER90818	Sorghum	nucleus	42.04	31.5
EES14801	Sorghum	nucleus	40.0	30.62
EER98942	Sorghum	nucleus	41.63	27.64
KXG35154	Sorghum	nucleus	35.92	27.5
OQU92760	Sorghum	nucleus	36.33	27.13
EES10507	Sorghum	nucleus	35.92	24.93
EES05913	Sorghum	nucleus	40.41	24.57
KXG38237	Sorghum	nucleus	24.9	23.83
EES12341	Sorghum	nucleus	35.51	23.45
OQU75617	Sorghum	nucleus	15.1	11.78

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8066610	UniProt:C5XLY8	EnsemblPlants:EES00143	ProteinID:EES00143
ProteinID:EES00143.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF607	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3003G034500	SUPFAM:SSF46689	unigene:Sbi.17779	UniParc:UPI0001A8443A	RefSeq:XP_002455023.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:3162695..3164264

Molecular Weight (calculated)

26068.6 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.291

Length

245 amino acids

Sequence
(BLAST)

001: MGRTPCCDRA AVKRGPWSPE EDEALRSYVQ RHGSGGNWIA MPKKAGLKRC GKSCRLRWLN YLRPDIRHGG FTAEEDAVIL SLYTQLGSKW SLIASQMEGR
101: TDNDVKNHWN TKLKKRLLAA AATSSPPPHA RLPAPAPASR TAHVSASSLF PSLAIPTVKT EAYTYDDFLA PALGDPFAAA DGSTSAASAA SSASNWSTAD
201: NGASEVSLFL LDFCAGPDLG AVAAADQLKL PGGYYYPLDS SLSPV

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.