Factsheet for HORVU3Hr1G019590.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G108000.1	Wheat	nucleus	90.33	91.01
TraesCS3D01G109800.1	Wheat	nucleus	88.48	89.14
TraesCS3B01G126800.1	Wheat	nucleus	89.22	88.89
EES00143	Sorghum	nucleus	63.94	70.2
Zm00001d039496_P001	Maize	nucleus	64.31	69.2
Os01t0191900-01	Rice	nucleus	63.57	64.77
HORVU3Hr1G068550.1	Barley	nucleus	33.09	40.83
HORVU4Hr1G087730.1	Barley	nucleus	33.09	40.83
HORVU4Hr1G055640.1	Barley	cytosol	5.58	34.88
HORVU7Hr1G096190.1	Barley	nucleus	31.97	33.08
HORVU5Hr1G063410.1	Barley	nucleus	35.69	31.89
HORVU5Hr1G098540.1	Barley	nucleus	34.57	29.9
HORVU1Hr1G061220.1	Barley	nucleus	32.71	27.76
HORVU4Hr1G055680.1	Barley	nucleus	29.37	26.16
HORVU1Hr1G051980.2	Barley	nucleus	23.42	25.51
HORVU6Hr1G083250.1	Barley	nucleus	34.2	25.34
HORVU2Hr1G081720.2	Barley	nucleus	29.37	25.32
HORVU2Hr1G010450.2	Barley	nucleus	31.97	24.5
HORVU3Hr1G063460.4	Barley	nucleus	26.39	22.83
HORVU1Hr1G045090.1	Barley	nucleus	23.42	21.0
HORVU1Hr1G084170.4	Barley	nucleus	18.59	15.53
CDY40299	Canola	nucleus	2.23	3.0

Protein Annotations

EnsemblPlants:HORVU3Hr1G019590.2	EnsemblPlantsGene:HORVU3Hr1G019590	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF607	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002965350	UniProt:M0YCE6	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:55915161..55917096

Molecular Weight (calculated)

28568.1 Da

IEP (calculated)

6.390

GRAVY (calculated)

-0.290

Length

269 amino acids

Sequence
(BLAST)

001: MGRAPCCDRA AVNRGPWSPE EDDALRDYMQ RHGNTGSWIT LPAKAGLKRC GKSCRLRWLN YLRPDIRHGG FTDEEDAIIY SLYSQLGSKW SLIASQLERR
101: TDNDVKNHWN TKLKKRLVAA AAAFPAAPSS RRPPSFTPAA AHAHAHPSPL LPLPAPTVKA ETYTYDDFLA PTAGLHDPFA ADGSSSASAA VQDPFATEGS
201: SSASAAVQDA FVGEGSTSAS AASSGSNWSA VDNAGGFFVD FCAAGADLAV ADQFLGGFYY PLDPTLSLV

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.