Factsheet for HORVU5Hr1G063410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G217900.1	Wheat	nucleus	92.03	89.64
TraesCS5B01G216900.1	Wheat	nucleus	90.37	88.6
TraesCS5D01G225800.1	Wheat	nucleus	91.03	86.71
EER98942	Sorghum	nucleus	66.11	53.93
Zm00001d020569_P001	Maize	nucleus	64.78	52.85
Zm00001d005784_P001	Maize	nucleus	59.8	52.02
HORVU4Hr1G055640.1	Barley	cytosol	6.64	46.51
Os09t0431300-00	Rice	nucleus	65.12	44.04
HORVU3Hr1G068550.1	Barley	nucleus	30.9	42.66
HORVU1Hr1G061220.1	Barley	nucleus	43.19	41.01
HORVU4Hr1G087730.1	Barley	nucleus	28.57	39.45
HORVU7Hr1G096190.1	Barley	nucleus	33.22	38.46
HORVU3Hr1G019590.2	Barley	nucleus	31.89	35.69
HORVU6Hr1G083250.1	Barley	nucleus	41.86	34.71
GSMUA_Achr7P19530_001	Banana	nucleus	39.2	34.6
AT5G57620.1	Thale cress	nucleus	37.87	34.23
VIT_11s0052g01490.t01	Wine grape	nucleus	41.2	33.97
CDY25898	Canola	nucleus	36.54	33.95
Bra006811.1-P	Field mustard	nucleus	37.21	33.84
CDX88631	Canola	nucleus	37.21	33.84
CDY11860	Canola	nucleus	37.54	33.83
HORVU5Hr1G098540.1	Barley	nucleus	34.88	33.76
Bra020428.1-P	Field mustard	nucleus	37.21	33.73
HORVU2Hr1G010450.2	Barley	nucleus	34.88	29.91
HORVU1Hr1G051980.2	Barley	nucleus	23.26	28.34
HORVU2Hr1G081720.2	Barley	nucleus	28.57	27.56
HORVU4Hr1G055680.1	Barley	nucleus	27.57	27.48
HORVU1Hr1G045090.1	Barley	nucleus	24.25	24.33
HORVU3Hr1G063460.4	Barley	nucleus	24.92	24.12
HORVU1Hr1G084170.4	Barley	nucleus	17.61	16.46

Protein Annotations

EnsemblPlants:HORVU5Hr1G063410.1	EnsemblPlantsGene:HORVU5Hr1G063410	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF946	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002951892	UniProt:M0WFE3	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:492407527..492408879

Molecular Weight (calculated)

32398.1 Da

IEP (calculated)

7.433

GRAVY (calculated)

-0.447

Length

301 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA SVKKGPWAAE EDDVLRAYVA DHGTPGNWIA LPRKIGLNRC GKSCRLRWLN YLRPNIRHGG FTDEEDRLIC SLYVSVGSRW STIAAQLPGR
101: TDNDVKNYWN TKLKRRLLGG GRRPIRYALP HLQPQPRLLL ASPTGGGAST ALERMQLSVQ RRHVGLQDTP GLPLYGNLWP AQQSVLSPAA GYSGFWSHIQ
201: DHQRTWGSGG TMPLSTSPTG ETAVGVGSSS STPAASSVTF DGDMEDEIEM LLQQIGCLEE EGSGQLIAGE AADDGSAGSW SSCSTPGVDS VFQGYVQGQG
301: Q

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.