Factsheet for TraesCS5D01G225800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G217900.1	Wheat	nucleus	94.62	96.76
TraesCS5B01G216900.1	Wheat	nucleus	93.04	95.77
HORVU5Hr1G063410.1	Barley	nucleus	86.71	91.03
EER98942	Sorghum	nucleus	64.56	55.28
Zm00001d020569_P001	Maize	nucleus	63.61	54.47
Zm00001d005784_P001	Maize	nucleus	57.91	52.89
TraesCS5D01G242200.1	Wheat	nucleus	27.22	45.5
Os09t0431300-00	Rice	nucleus	63.92	45.39
TraesCS1D01G252300.1	Wheat	nucleus	27.85	43.35
TraesCS7D01G407500.1	Wheat	nucleus	32.59	38.87
TraesCS3D01G109800.1	Wheat	nucleus	31.01	36.7
GSMUA_Achr7P19530_001	Banana	nucleus	38.61	35.78
AT5G57620.1	Thale cress	nucleus	36.71	34.83
VIT_11s0052g01490.t01	Wine grape	nucleus	40.19	34.79
TraesCS5D01G415800.1	Wheat	nucleus	34.18	34.73
CDY25898	Canola	nucleus	35.44	34.57
Bra006811.1-P	Field mustard	nucleus	36.08	34.44
CDX88631	Canola	nucleus	36.08	34.44
CDY11860	Canola	nucleus	36.39	34.43
Bra020428.1-P	Field mustard	nucleus	36.08	34.34
TraesCS6D01G327300.1	Wheat	nucleus	39.56	34.25
TraesCS3D01G286300.1	Wheat	nucleus	31.01	33.91
TraesCS4D01G360600.1	Wheat	nucleus	28.48	33.71
TraesCS3D01G265100.1	Wheat	nucleus	31.96	33.55
TraesCS1D01G387100.1	Wheat	nucleus	32.59	33.44
TraesCS2D01G068000.1	Wheat	nucleus	33.86	30.66
TraesCS4D01G192400.1	Wheat	nucleus	28.48	29.22
TraesCS1D01G204500.1	Wheat	nucleus	21.84	27.71
TraesCS2D01G331700.1	Wheat	nucleus	28.16	25.28

Protein Annotations

EnsemblPlants:TraesCS5D01G225800.1	EnsemblPlantsGene:TraesCS5D01G225800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF946	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:334255216..334256281

Molecular Weight (calculated)

34024.1 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.415

Length

316 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA SVKKGPWAAE EDAVLRAYVA EHGTAGNWIA LPRKIGLNRC GKSCRLRWLN YLRPNIRHGG FTDEEDRLIC SLYASIGSRW STIAAQLPGR
101: TDNDVKNYWN TKLKRRLLGG GRRSIRYALP LPQQPRLLLM SPTGGGAAST ALERMQLSVQ RRHVGIQDAP GLPFYGNLWP AQQSVLSPAA GYSGFWSHIQ
201: TSTNPGRVNV QDHQRAWGSS GGGGTTPLVT SPAGETAVGV GSSSSTPAAS SVTFDGDMED EIEMLLQQIG CLEEEDSRLL IGGEAGSAGS WSSCSTPGVD
301: SVFQDYVQGH GQQNYM

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.