Factsheet for TraesCS3D01G286300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G286600.1	Wheat	nucleus	93.43	92.78
HORVU3Hr1G068550.1	Barley	nucleus	63.32	83.94
TraesCS5D01G242200.1	Wheat	nucleus	49.48	75.66
TraesCS4D01G360600.1	Wheat	nucleus	62.63	67.79
TraesCS3B01G320800.1	Wheat	nucleus, plastid	84.78	66.94
Os01t0722300-01	Rice	nucleus	61.59	59.73
Zm00001d011739_P001	Maize	nucleus	54.67	54.48
Zm00001d043611_P001	Maize	nucleus	59.52	54.43
EES01384	Sorghum	nucleus	58.48	53.14
TraesCS3D01G109800.1	Wheat	nucleus	32.53	35.21
TraesCS1D01G387100.1	Wheat	nucleus	36.33	34.09
TraesCS7D01G407500.1	Wheat	nucleus	29.76	32.45
TraesCS3D01G265100.1	Wheat	nucleus	33.22	31.89
TraesCS5D01G415800.1	Wheat	nucleus	33.91	31.51
TraesCS1D01G252300.1	Wheat	nucleus	21.8	31.03
TraesCS5D01G225800.1	Wheat	nucleus	33.91	31.01
TraesCS4D01G192400.1	Wheat	nucleus	29.41	27.6
TraesCS6D01G327300.1	Wheat	nucleus	31.49	24.93
TraesCS2D01G068000.1	Wheat	nucleus	30.1	24.93
TraesCS1D01G204500.1	Wheat	nucleus	21.45	24.9
TraesCS2D01G331700.1	Wheat	nucleus	28.72	23.58
CDY40299	Canola	nucleus	5.88	8.5

Protein Annotations

EnsemblPlants:TraesCS3D01G286300.1	EnsemblPlantsGene:TraesCS3D01G286300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF566	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:395064326..395065769

Molecular Weight (calculated)

31234.3 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.404

Length

289 amino acids

Sequence
(BLAST)

001: MGRSPCCDKA SVKRGPWSRE EDAILRNFVR RFANAGNWIT LPQKAGLNRC GKSCRLRWLN YLRPALRHGG FTDEEDSLIL SLYGDIGSRW SVIAAKLPGR
101: TDNDVKNHWN TKLKKRYYSL TAAPSTPPTG GDAVASADSP HGVDQSSLPP PPPAMVNLGA ALATLDDGGE LTRESEQLYA ELMGLIEPQS TTRESTGEVM
201: SSPSSFGTSP TASSFAAGSS ATWPVDVHDT ILWPESSGSG TVEFDDPCVA HTFGPASTPD SFQDLLASSY DEVIATQELL YLGMNWSEF

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.