Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- peroxisome 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G068550.1 | Barley | nucleus | 51.09 | 85.78 |
| TraesCS3A01G286600.1 | Wheat | nucleus | 67.49 | 84.88 |
| TraesCS3D01G286300.1 | Wheat | nucleus | 66.94 | 84.78 |
| TraesCS4B01G366600.1 | Wheat | nucleus | 45.9 | 62.22 |
| Os01t0722300-01 | Rice | nucleus | 45.36 | 55.7 |
| Zm00001d011739_P001 | Maize | nucleus | 42.08 | 53.1 |
| EES01384 | Sorghum | nucleus | 44.26 | 50.94 |
| Zm00001d043611_P001 | Maize | nucleus | 43.72 | 50.63 |
| TraesCS3B01G126800.1 | Wheat | nucleus | 25.68 | 34.81 |
| TraesCS1B01G401700.1 | Wheat | nucleus | 28.96 | 33.97 |
| TraesCS7B01G314200.1 | Wheat | nucleus | 23.77 | 32.83 |
| TraesCS3B01G298200.1 | Wheat | nucleus | 25.96 | 31.67 |
| TraesCS5B01G216900.1 | Wheat | nucleus | 26.23 | 31.27 |
| TraesCS5B01G410500.1 | Wheat | nucleus | 25.68 | 30.23 |
| TraesCS1B01G265400.1 | Wheat | nucleus | 25.41 | 29.25 |
| TraesCS4B01G191200.1 | Wheat | nucleus | 22.4 | 26.62 |
| TraesCS2B01G082400.1 | Wheat | nucleus | 24.04 | 25.07 |
| TraesCS6B01G377400.1 | Wheat | nucleus | 24.86 | 25.0 |
| TraesCS2B01G351000.1 | Wheat | nucleus | 22.13 | 23.01 |
| TraesCS1B01G215500.1 | Wheat | nucleus | 16.12 | 22.78 |
| CDY40299 | Canola | nucleus | 4.92 | 9.0 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G320800.1 | EnsemblPlantsGene:TraesCS3B01G320800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF566 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:519777053..519778726
Molecular Weight (calculated)
39359.5 Da
IEP (calculated)
7.427
GRAVY (calculated)
-0.293
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAALYNSF LTVGRITRPE SAIPIHLLPR SAFSLIGRPE LLDRSMGRSP CCDKASVKRG PWSREEDAIL RNFVQRFANA GNWITLPQKA GLNRCGKSCR
101: LRWLNYLRPA LRHGGFTEEE DSLILSLYGD IGSRWSVIAA KLPGRTDNDV KNHWNTKLKK RYYSLTAAPS TPPTGGDAIA SADSPHGVDQ SSLPPPAPAL
201: VNLDAALATV DDGGELTHES EQLYAELMGL IEPQSTTHTS TGEVMSSPSS SSQPPFGASP TVSSFAAGSS ATWPVDVHDT ILWPESSGNG MVEFDDPCVA
301: QAFGPPSMSH LLRCSGGLAR RRSSTGELWA EPTGSGLGRM WPSRPSCVCA CTYGTVLCWT RSEGKV
101: LRWLNYLRPA LRHGGFTEEE DSLILSLYGD IGSRWSVIAA KLPGRTDNDV KNHWNTKLKK RYYSLTAAPS TPPTGGDAIA SADSPHGVDQ SSLPPPAPAL
201: VNLDAALATV DDGGELTHES EQLYAELMGL IEPQSTTHTS TGEVMSSPSS SSQPPFGASP TVSSFAAGSS ATWPVDVHDT ILWPESSGNG MVEFDDPCVA
301: QAFGPPSMSH LLRCSGGLAR RRSSTGELWA EPTGSGLGRM WPSRPSCVCA CTYGTVLCWT RSEGKV
001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
Arabidopsis Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.