CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043611_P001	Maize	nucleus	74.53	75.0
Zm00001d011739_P001	Maize	nucleus	63.21	69.31
HORVU3Hr1G068550.1	Barley	nucleus	43.71	63.76
TraesCS5D01G242200.1	Wheat	nucleus	37.11	62.43
HORVU4Hr1G087730.1	Barley	nucleus	41.51	60.55
Os01t0722300-01	Rice	nucleus	55.66	59.4
TraesCS3D01G286300.1	Wheat	nucleus	53.14	58.48
TraesCS4D01G360600.1	Wheat	nucleus	48.11	57.3
TraesCS3A01G286600.1	Wheat	nucleus	52.2	57.04
TraesCS4B01G366600.1	Wheat	nucleus	48.43	57.04
TraesCS5A01G534400.1	Wheat	nucleus	47.8	56.72
TraesCS3B01G320800.1	Wheat	nucleus, plastid	50.94	44.26
EES00143	Sorghum	nucleus	31.76	41.22
OQU79721	Sorghum	nucleus	30.19	39.51
EES18637	Sorghum	nucleus	31.45	34.6
OQU87345	Sorghum	nucleus	32.08	30.63
EES14801	Sorghum	nucleus	29.87	29.69
EER90818	Sorghum	nucleus	29.56	28.75
OQU92760	Sorghum	nucleus	27.04	26.22
EES10507	Sorghum	nucleus	28.3	25.5
KXG38237	Sorghum	nucleus	20.44	25.39
KXG35154	Sorghum	nucleus	25.47	25.31
EER98942	Sorghum	nucleus	29.25	25.2
EES05913	Sorghum	nucleus	29.56	23.33
EES12341	Sorghum	nucleus	26.1	22.37
OQU75617	Sorghum	nucleus	11.01	11.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8059197	UniProt:C5XID7	EnsemblPlants:EES01384	ProteinID:EES01384
ProteinID:EES01384.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF566	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3003G280000	SUPFAM:SSF46689	UniParc:UPI0001A84846	RefSeq:XP_002456264.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:61539065..61541387

Molecular Weight (calculated)

34285.7 Da

IEP (calculated)

4.530

GRAVY (calculated)

-0.458

Length

318 amino acids

Sequence
(BLAST)

001: MGRSPCCDKT RVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPHKAGLKRC GKSCRLRWLN YLRPELRHGG FTDEEDNLIL SLYGELGSKW SVIASRLPGR
101: TDNDVKNYWN TKLKKRYLAA STREEGRPPP TSPPAATPSG DDSTAAAGSD QQAQRQDEPL LLPLTPPALT DLDDTGTAAF VDTGARATVV VDDDMLLFKS
201: EQLYAELVGL VDEKQSSQQA TTGASAGSRD EASTATPSSS LSGTTSSSPT VSSSSGSCTL WPDTTLLPES TTGLFDDYGV GDAFGVALLP AYYFQDLMAA
301: SSYDDVTATV AQDLLYYQ

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.