Factsheet for TraesCS4B01G366600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G534400.1	Wheat	nucleus	90.74	91.42
TraesCS4D01G360600.1	Wheat	nucleus	90.37	91.39
HORVU4Hr1G087730.1	Barley	nucleus	71.85	88.99
Os01t0722300-01	Rice	nucleus	59.26	53.69
Zm00001d011739_P001	Maize	nucleus	52.59	48.97
Zm00001d043611_P001	Maize	nucleus	57.04	48.73
EES01384	Sorghum	nucleus	57.04	48.43
TraesCS3B01G320800.1	Wheat	nucleus, plastid	62.22	45.9
TraesCS3B01G126800.1	Wheat	nucleus	33.33	33.33
TraesCS7B01G314200.1	Wheat	nucleus	31.11	31.7
TraesCS1B01G401700.1	Wheat	nucleus	36.3	31.41
TraesCS3B01G298200.1	Wheat	nucleus	31.85	28.67
TraesCS5B01G216900.1	Wheat	nucleus	32.59	28.66
TraesCS5B01G410500.1	Wheat	nucleus	32.22	27.97
TraesCS4B01G191200.1	Wheat	nucleus	31.11	27.27
TraesCS1B01G265400.1	Wheat	nucleus	31.85	27.04
TraesCS2B01G082400.1	Wheat	nucleus	31.11	23.93
TraesCS6B01G377400.1	Wheat	nucleus	31.85	23.63
TraesCS1B01G215500.1	Wheat	nucleus	21.48	22.39
TraesCS2B01G351000.1	Wheat	nucleus	28.52	21.88
CDY40299	Canola	nucleus	6.3	8.5

Protein Annotations

EnsemblPlants:TraesCS4B01G366600.1	EnsemblPlantsGene:TraesCS4B01G366600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930	InterPro:Myb-like_dom	InterPro:Myb_dom
InterPro:SANT/Myb	PANTHER:PTHR10641	PANTHER:PTHR10641:SF566	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	TIGR:cd00167	MapMan:15.5.2.1	:

Description

No Description!

Coordinates

chr4B:-:654042563..654043841

Molecular Weight (calculated)

29129.1 Da

IEP (calculated)

5.656

GRAVY (calculated)

-0.430

Length

270 amino acids

Sequence
(BLAST)

001: MGRSSCCDRR SVKRGAWSRE EDAILTGFVK RFANAGNWMT LPHKAGLNRC GKSCRLRWLN YLRPALRHGR FTDEEDSLIL SLYGDIGSKW SVIAAKLPGR
101: TDNDVKNHWN TKLKKRHLLA MAPSPTPPTA ATDSSSASDA DESPLLPPPL DEPALALATV DDGGELTHRS EELYAELMGL IQQQPTTGDV RSPSSSSLSS
201: TPTAGASSAG VSTATSPVDD KEFLPESRGS SMVVELDDPC AAHAFGATSF QDLLASSYDE IIGKEGLLYY

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.