Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU7Hr1G096190.1 | Barley | nucleus | 90.57 | 92.31 |
TraesCS7D01G407500.1 | Wheat | nucleus | 91.7 | 91.7 |
TraesCS7A01G414300.1 | Wheat | nucleus | 93.58 | 91.51 |
Zm00001d005307_P001 | Maize | nucleus | 48.3 | 43.39 |
GSMUA_Achr1P03140_001 | Banana | nucleus | 40.38 | 42.13 |
KXG35154 | Sorghum | nucleus | 48.68 | 40.31 |
GSMUA_Achr5P10690_001 | Banana | nucleus | 41.51 | 39.43 |
GSMUA_Achr4P25260_001 | Banana | nucleus | 39.25 | 37.28 |
VIT_06s0061g00470.t01 | Wine grape | nucleus | 44.15 | 36.91 |
GSMUA_Achr8P14190_001 | Banana | nucleus | 40.75 | 34.5 |
TraesCS5B01G216900.1 | Wheat | nucleus | 38.87 | 33.55 |
TraesCS5B01G410500.1 | Wheat | nucleus | 39.25 | 33.44 |
TraesCS1B01G265400.1 | Wheat | nucleus | 39.25 | 32.7 |
TraesCS3B01G298200.1 | Wheat | nucleus | 36.98 | 32.67 |
VIT_08s0007g05030.t01 | Wine grape | nucleus | 40.75 | 31.58 |
TraesCS3B01G126800.1 | Wheat | nucleus | 32.08 | 31.48 |
TraesCS4B01G366600.1 | Wheat | nucleus | 31.7 | 31.11 |
TraesCS1B01G401700.1 | Wheat | nucleus | 36.6 | 31.09 |
TraesCS2B01G082400.1 | Wheat | nucleus | 40.38 | 30.48 |
TraesCS6B01G377400.1 | Wheat | nucleus | 40.75 | 29.67 |
TraesCS4B01G191200.1 | Wheat | nucleus | 34.34 | 29.55 |
TraesCS1B01G215500.1 | Wheat | nucleus | 25.28 | 25.87 |
TraesCS3B01G320800.1 | Wheat | nucleus, plastid | 32.83 | 23.77 |
TraesCS2B01G351000.1 | Wheat | nucleus | 31.32 | 23.58 |
Protein Annotations
EnsemblPlants:TraesCS7B01G314200.1 | EnsemblPlantsGene:TraesCS7B01G314200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
PANTHER:PTHR10641:SF654 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:561279959..561280847
Molecular Weight (calculated)
28870.8 Da
IEP (calculated)
7.916
GRAVY (calculated)
-0.506
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKG SVKKGPWSPE EDRKLKDYIH THGTGGNWIA LPTKAGLKRC GKSCRLRWLN YLRPNIKHGD FSDEEDRVIC ALFAAIGSRW SIIAAQLPGR
101: TDNDVKNYWN TKLKKKQLHL LIAASAHGQQ YGSRPPAPPF TLEHHHTSST SAASLGQLLM FGVGGGDHHH QQQQQQYMSS CSSVDISNNA SAAAALGLQE
201: SFMFGGLEFQ QQEEDANNLL SPAAAASGSD TMTYEHHAMI SPSGFFFYGD GAGAAATQEG TRFLY
101: TDNDVKNYWN TKLKKKQLHL LIAASAHGQQ YGSRPPAPPF TLEHHHTSST SAASLGQLLM FGVGGGDHHH QQQQQQYMSS CSSVDISNNA SAAAALGLQE
201: SFMFGGLEFQ QQEEDANNLL SPAAAASGSD TMTYEHHAMI SPSGFFFYGD GAGAAATQEG TRFLY
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
Arabidopsis Description
RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.