Factsheet for VIT_08s0007g05030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03140_001	Banana	nucleus	34.8	46.85
GSMUA_Achr5P10690_001	Banana	nucleus	36.26	44.44
VIT_06s0061g00470.t01	Wine grape	nucleus	40.64	43.85
GSMUA_Achr11P...	Banana	nucleus	33.33	43.68
GSMUA_Achr4P25260_001	Banana	nucleus	35.09	43.01
GSMUA_AchrUn_...	Banana	nucleus	34.21	42.86
HORVU7Hr1G096190.1	Barley	nucleus	31.87	41.92
GSMUA_Achr8P14190_001	Banana	nucleus	38.01	41.53
TraesCS7D01G407500.1	Wheat	nucleus	31.87	41.13
TraesCS7B01G314200.1	Wheat	nucleus	31.58	40.75
TraesCS7A01G414300.1	Wheat	nucleus	32.16	40.59
GSMUA_Achr2P04200_001	Banana	nucleus	35.09	39.87
Zm00001d005307_P001	Maize	nucleus	33.04	38.31
VIT_04s0008g00620.t01	Wine grape	nucleus	29.24	37.88
VIT_18s0001g08470.t01	Wine grape	nucleus	34.8	35.0
KXG35154	Sorghum	nucleus	32.16	34.38
VIT_00s1352g00010.t01	Wine grape	nucleus	33.92	34.22
VIT_11s0016g02780.t01	Wine grape	nucleus	27.19	32.63
VIT_11s0052g01490.t01	Wine grape	nucleus	33.63	31.51
VIT_17s0000g05400.t01	Wine grape	nucleus	26.02	29.09
VIT_19s0015g01280.t01	Wine grape	nucleus	24.56	25.45
VIT_14s0066g02180.t01	Wine grape	nucleus	25.73	20.18

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267549	wikigene:100267549	MapMan:15.5.2.1	ProteinID:CBI30141	ProteinID:CBI30141.3
UniProt:D7TIR5	EMBL:FN595991	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100267549	wikigene:LOC100267549	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF687	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CD0EC	ArrayExpress:VIT_08s0007g05030
EnsemblPlantsGene:VIT_08s0007g05030	EnsemblPlants:VIT_08s0007g05030.t01	unigene:Vvi.23853	RefSeq:XP_002270359	RefSeq:XP_002270359.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:18944925..18946778

Molecular Weight (calculated)

37662.7 Da

IEP (calculated)

7.246

GRAVY (calculated)

-0.696

Length

342 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN YLRPNIKHGE FSDDEDRIIC SVFASIGSKW SVIANYLPGR
101: TDNDIKNYWN TKLKKKLMGM VPVSQRKPHQ ATFSHHLQTY SSLSSPSHAV TTTATSSSYE SNSSNPYYTP AAPTPTSFAR LEPISSIPSS LLNINTGSTA
201: AAAIHPQEGF ASPVHHYQVK DNLLIEASSS SDDGSGSNQI SQGKEPEYDQ YGAVGGRYEQ LGFQNYVYTG LDDQNQRFMI SNSSGGGGGS GSHGWTDQRP
301: NGMLGEPPLD LGLEEFKQLI SANLCNNFSF DENKTEERVV YY

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.