Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc08g065910.1.1 | Tomato | nucleus | 33.33 | 44.6 |
VIT_04s0008g00620.t01 | Wine grape | nucleus | 40.35 | 43.56 |
KRH49024 | Soybean | nucleus | 37.54 | 41.15 |
KRH74186 | Soybean | nucleus | 36.49 | 39.85 |
PGSC0003DMT400035941 | Potato | nucleus | 24.56 | 38.25 |
PGSC0003DMT400000932 | Potato | nucleus | 38.25 | 37.72 |
Solyc12g008670.1.1 | Tomato | nucleus | 37.19 | 37.59 |
KRH60169 | Soybean | nucleus | 32.28 | 37.1 |
VIT_00s1352g00010.t01 | Wine grape | nucleus | 41.05 | 34.51 |
VIT_06s0061g00470.t01 | Wine grape | nucleus | 36.14 | 32.49 |
VIT_18s0001g08470.t01 | Wine grape | nucleus | 38.25 | 32.06 |
VIT_17s0000g05400.t01 | Wine grape | nucleus | 32.28 | 30.07 |
VIT_11s0052g01490.t01 | Wine grape | nucleus | 36.84 | 28.77 |
VIT_08s0007g05030.t01 | Wine grape | nucleus | 32.63 | 27.19 |
VIT_19s0015g01280.t01 | Wine grape | nucleus | 29.47 | 25.45 |
VIT_14s0066g02180.t01 | Wine grape | nucleus | 33.33 | 21.79 |
Protein Annotations
Gene3D:1.10.10.60 | EntrezGene:100243880 | wikigene:100243880 | MapMan:15.5.2.1 | EMBL:AM481708 | ProteinID:CAN81807 |
ProteinID:CAN81807.1 | ProteinID:CBI27967 | ProteinID:CBI27967.3 | UniProt:D7TBD2 | EMBL:FN595756 | GO:GO:0000981 |
GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EntrezGene:LOC100243880 | wikigene:LOC100243880 | InterPro:Myb_dom |
PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF694 | InterPro:SANT/Myb | SMART:SM00717 |
SUPFAM:SSF46689 | UniParc:UPI0001BE2FC2 | ArrayExpress:VIT_11s0016g02780 | EnsemblPlantsGene:VIT_11s0016g02780 | EnsemblPlants:VIT_11s0016g02780.t01 | RefSeq:XP_002280054 |
RefSeq:XP_002280054.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:2193249..2194453
Molecular Weight (calculated)
31158.1 Da
IEP (calculated)
7.178
GRAVY (calculated)
-0.546
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKRGPWSPE EDNILRAFVE AHGTGGNWIA LPRKAGLKRC GKSCRLRWLN YLRPDIKHGG FTEDEDNIIV TLYNNIGSRW SVIASHLPRR
101: TDNDVKNYWN TKLKKKLSGK ADLKKGSNNN GNATSNSIIH LSSVQFPGSI PKVEDYDYGI SVGFGTDSSP VSYQTGMSYQ QDFHSQGLVS NPAVQFPLPG
201: PMEVSEFNTS GNTSYSISSS QEVSSLSAAS SSLALDNTTH ASWSSYNGGR VQDDEFLFDF GSPYGLLSGF GFQEQAHEAG LVNQI
101: TDNDVKNYWN TKLKKKLSGK ADLKKGSNNN GNATSNSIIH LSSVQFPGSI PKVEDYDYGI SVGFGTDSSP VSYQTGMSYQ QDFHSQGLVS NPAVQFPLPG
201: PMEVSEFNTS GNTSYSISSS QEVSSLSAAS SSLALDNTTH ASWSSYNGGR VQDDEFLFDF GSPYGLLSGF GFQEQAHEAG LVNQI
001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY
Arabidopsis Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.