Factsheet for VIT_11s0052g01490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018319_P001	Maize	nucleus	21.64	87.78
TraesCS1A01G252600.1	Wheat	nucleus	42.47	48.29
TraesCS1D01G252300.1	Wheat	nucleus	26.85	48.28
Bra020428.1-P	Field mustard	nucleus	43.56	47.89
KRH18986	Soybean	nucleus	47.4	47.79
TraesCS1B01G265400.1	Wheat	nucleus	41.37	47.48
Os08t0248700-01	Rice	nucleus	41.1	47.47
HORVU1Hr1G061220.1	Barley	nucleus	41.1	47.32
EES14801	Sorghum	nucleus	41.37	47.19
KRH02902	Soybean	nucleus	47.12	47.12
CDY11860	Canola	nucleus	42.74	46.71
CDY25898	Canola	nucleus	41.37	46.6
AT5G57620.1	Thale cress	nucleus	42.47	46.55
Bra006811.1-P	Field mustard	nucleus	42.19	46.53
CDX88631	Canola	nucleus	42.19	46.53
GSMUA_Achr5P22760_001	Banana	nucleus	39.73	45.89
Zm00001d050185_P002	Maize	nucleus	41.1	44.91
GSMUA_Achr9P13610_001	Banana	nucleus	37.53	44.19
GSMUA_Achr8P24780_001	Banana	nucleus	36.99	43.97
TraesCS6A01G344700.1	Wheat	nucleus	43.01	43.01
TraesCS6D01G327300.1	Wheat	nucleus	43.01	43.01
HORVU6Hr1G083250.1	Barley	nucleus	42.74	42.98
TraesCS6B01G377400.1	Wheat	nucleus	42.47	42.58
VIT_18s0001g08470.t01	Wine grape	nucleus	39.45	42.35
VIT_04s0008g00620.t01	Wine grape	nucleus	30.14	41.67
VIT_00s1352g00010.t01	Wine grape	nucleus	38.36	41.3
HORVU5Hr1G063410.1	Barley	nucleus	33.97	41.2
TraesCS5B01G216900.1	Wheat	nucleus	34.52	41.04
TraesCS5A01G217900.1	Wheat	nucleus	34.52	40.78
GSMUA_Achr7P19530_001	Banana	nucleus	38.08	40.76
TraesCS5D01G225800.1	Wheat	nucleus	34.79	40.19
Zm00001d052069_P001	Maize	nucleus	42.74	39.39
PGSC0003DMT400009926	Potato	nucleus	32.33	39.33
EES05913	Sorghum	nucleus	43.29	39.21
Solyc09g008250.2.1	Tomato	nucleus	31.78	39.19
PGSC0003DMT400005085	Potato	nucleus	32.05	39.0
VIT_06s0061g00470.t01	Wine grape	nucleus	33.15	38.17
EER98942	Sorghum	nucleus	38.36	37.94
Zm00001d005784_P001	Maize	nucleus	35.89	37.86
Zm00001d020569_P001	Maize	nucleus	38.08	37.67
VIT_11s0016g02780.t01	Wine grape	nucleus	28.77	36.84
Os02t0786400-00	Rice	extracellular	41.64	34.86
VIT_08s0007g05030.t01	Wine grape	nucleus	31.51	33.63
Os09t0431300-00	Rice	nucleus	37.53	30.79
VIT_17s0000g05400.t01	Wine grape	nucleus	23.84	28.43
VIT_19s0015g01280.t01	Wine grape	nucleus	24.38	26.97
VIT_14s0066g02180.t01	Wine grape	nucleus	24.93	20.87

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256441	wikigene:100256441	MapMan:15.5.2.1	ProteinID:CBI17787	ProteinID:CBI17787.3
UniProt:D7SQ56	EMBL:FN594964	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008285	GO:GO:0009058	GO:GO:0009653	GO:GO:0009790	GO:GO:0009987
GO:GO:0030154	GO:GO:0030312	GO:GO:0035987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045597
GO:GO:0045892	GO:GO:0045893	GO:GO:0048226	GO:GO:0050801	GO:GO:2000067	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100256441	wikigene:LOC100256441	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF891	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BE169F
ArrayExpress:VIT_11s0052g01490	EnsemblPlantsGene:VIT_11s0052g01490	EnsemblPlants:VIT_11s0052g01490.t01	RefSeq:XP_002270766	RefSeq:XP_002270766.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:19235088..19236560

Molecular Weight (calculated)

41154.3 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.747

Length

365 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKTYIE QYGTGGNWIA LPQKIGRLKR CGKSCRLRWL NYLRPNIKHG GFSEEEDSII CNLYISIGSR WSVIAAQLPG
101: RTDNDIKNYW NTRLKKKLLG KRKQSHFNRL SVAGQDPKDA TGVEDNPYSQ ALSNSALERL QLHMQLQSLQ HPFAFYNNPA LWPKLHPLQE KLIQNLQNEL
201: PSPLMQHTPP SSDPMGQEQK SGFYEPPTAS ITLQQEYPKT NNPKGDEFEK SLNVLPSSDS SMAYNSENMV GAPIMSKPDG VDQSNIAQQA VSTFQAELDD
301: FLNNKMVGFL PQEEQMTEID GSKDSLAWWS NDFDTKSASS HSWDSTSVIQ SEGMFQDYVL GYNLQ

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.