Factsheet for Zm00001d018319_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038930_P001	Maize	nucleus	76.67	26.34
Zm00001d034207_P001	Maize	nucleus	86.67	24.84
Zm00001d005307_P001	Maize	nucleus	81.11	24.75
Zm00001d039496_P001	Maize	nucleus	66.67	24.0
Zm00001d050185_P002	Maize	nucleus	88.89	23.95
CDY25898	Canola	nucleus	84.44	23.46
HORVU6Hr1G083250.1	Barley	nucleus	94.44	23.42
TraesCS6B01G377400.1	Wheat	nucleus	94.44	23.35
TraesCS6D01G327300.1	Wheat	nucleus	94.44	23.29
TraesCS6A01G344700.1	Wheat	nucleus	94.44	23.29
AT5G57620.1	Thale cress	nucleus	85.56	23.12
CDY11860	Canola	nucleus	85.56	23.05
Bra006811.1-P	Field mustard	nucleus	84.44	22.96
CDX88631	Canola	nucleus	84.44	22.96
Bra020428.1-P	Field mustard	nucleus	84.44	22.89
KRH18986	Soybean	nucleus	90.0	22.38
Zm00001d013164_P002	Maize	nucleus	86.67	22.29
PGSC0003DMT400048261	Potato	nucleus	90.0	22.01
EES05913	Sorghum	nucleus	97.78	21.84
Zm00001d052069_P001	Maize	nucleus	95.56	21.72
VIT_11s0052g01490.t01	Wine grape	nucleus	87.78	21.64
KRH02902	Soybean	nucleus	87.78	21.64
Zm00001d043837_P001	Maize	nucleus	75.56	21.25
Zm00001d011614_P001	Maize	nucleus	75.56	20.86
Zm00001d004126_P001	Maize	nucleus	82.22	20.56
Zm00001d005784_P001	Maize	nucleus	78.89	20.52
Zm00001d011739_P001	Maize	nucleus	65.56	20.34
Os02t0786400-00	Rice	extracellular	96.67	19.95
Zm00001d020569_P001	Maize	nucleus	81.11	19.78
Zm00001d028777_P001	Maize	nucleus	67.78	19.12
Solyc07g006750.2.1	Tomato	mitochondrion	90.0	19.1
Zm00001d043611_P001	Maize	nucleus	66.67	18.99
Zm00001d013931_P001	Maize	nucleus	45.56	15.02
Zm00001d025664_P001	Maize	nucleus	57.78	14.61

Protein Annotations

EnsemblPlants:Zm00001d018319_P001	EnsemblPlants:Zm00001d018319_T001	EnsemblPlantsGene:Zm00001d018319	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	ProteinID:AQK75609.1	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00084559F0	UniProt:A0A1D6HMR9	MapMan:15.5.2.1	:	:

Description

myb domain protein 87

Coordinates

chr5:+:218433161..218434414

Molecular Weight (calculated)

10245.4 Da

IEP (calculated)

9.039

GRAVY (calculated)

-0.603

Length

90 amino acids

Sequence
(BLAST)

1: MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIVGLKR CGKSCRLRWL NYLRRNIKHG DFTEEEEHII CSLYISIGSR

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.