Factsheet for Os02t0786400-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018319_P001	Maize	nucleus	19.95	96.67
TraesCS6B01G377400.1	Wheat	nucleus	40.83	48.9
TraesCS6D01G327300.1	Wheat	nucleus	40.6	48.49
HORVU6Hr1G083250.1	Barley	nucleus	40.37	48.48
TraesCS6A01G344700.1	Wheat	nucleus	40.37	48.22
Zm00001d052069_P001	Maize	nucleus	43.35	47.73
EES05913	Sorghum	nucleus	43.58	47.15
Os08t0248700-01	Rice	nucleus	32.34	44.62
VIT_11s0052g01490.t01	Wine grape	nucleus	34.86	41.64
Os05t0553400-01	Rice	nucleus	27.29	41.18
Bra020428.1-P	Field mustard	nucleus	30.05	39.46
CDY25898	Canola	nucleus	29.13	39.2
Bra006811.1-P	Field mustard	nucleus	29.59	38.97
CDX88631	Canola	nucleus	29.59	38.97
CDY11860	Canola	nucleus	29.82	38.92
Os03t0771100-01	Rice	nucleus	28.44	38.63
PGSC0003DMT400048261	Potato	nucleus	32.57	38.59
AT5G57620.1	Thale cress	nucleus	29.36	38.44
Os08t0102050-00	Rice	nucleus	4.13	38.3
Os12t0633501-00	Rice	mitochondrion	9.4	37.96
KRH18986	Soybean	nucleus	31.42	37.85
KRH02902	Soybean	nucleus	30.73	36.71
Solyc07g006750.2.1	Tomato	mitochondrion	33.95	34.91
Os03t0296000-00	Rice	nucleus	8.03	33.98
Os01t0191900-01	Rice	nucleus	20.18	33.33
Os01t0722300-01	Rice	nucleus	21.33	31.21
Os09t0431300-00	Rice	nucleus	30.96	30.34
Os01t0685400-01	Rice	nucleus	10.78	20.09

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	Gene3D:3.40.33.10	UniProt:A0A0P0VQE6	InterPro:Allrgn_V5/Tpx1	InterPro:Allrgn_V5/Tpx1_CS
ProteinID:BAS81274.1	InterPro:CAP_domain	InterPro:CAP_sf	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:IPR035940	InterPro:Myb_dom	EnsemblPlantsGene:Os02g0786400	EnsemblPlants:Os02t0786400-00
PFAM:PF00188	PFAM:PF00249	PRINTS:PR00837	ScanProsite:PS01009	PFscan:PS51294	PANTHER:PTHR10334
PANTHER:PTHR10334:SF324	InterPro:SANT/Myb	InterPro:SCP_PR1-like	SMART:SM00198	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF55797	UniParc:UPI000393994C	SEG:seg	:	:	:

Description

Similar to DNA-binding transcription factor blind 1. (Os02t0786400-00)

Coordinates

chr2:+:33400276..33405605

Molecular Weight (calculated)

46009.2 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.368

Length

436 amino acids

Sequence
(BLAST)

001: MHPLTAAAKH AITIPPPPPP AAAASYTSSP SSGTSDPSVL DLSSAEIDDD GDGDDDRAEQ QEIKNSKELV MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE
101: ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK RAPSRRARAN
201: QDHCGLAGSA AAAMCGGVGT AAAAAPPHQA LSSSALERIQ LHMRLQGLYN SAFGCTTTSS NGGGVGVAPP QWPKLEALLP SRPLPAVQPT DASLASGFLD
301: AHNAARRQVG VPPLRWDERL ASYAARYAAA RSGAGGGCAL VHSHGPYGEN LFHGSGVGWA PADVVAAWVS RERALYDAAS NSCRGGDAAA CGHYTQVVWR
401: RTTAVGCALA TCAGGRGTYG VCSYNPPGNY VGVRPY

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.