Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79721 | Sorghum | nucleus | 38.89 | 17.28 |
| Os08t0102050-00 | Rice | nucleus | 6.48 | 14.89 |
| Os01t0191900-01 | Rice | nucleus | 34.26 | 14.02 |
| Os03t0771100-01 | Rice | nucleus | 38.89 | 13.08 |
| Os01t0722300-01 | Rice | nucleus | 35.19 | 12.75 |
| Os05t0553400-01 | Rice | nucleus | 31.48 | 11.76 |
| Os08t0248700-01 | Rice | nucleus | 33.33 | 11.39 |
| Os09t0431300-00 | Rice | nucleus | 39.81 | 9.66 |
| Os02t0786400-00 | Rice | extracellular | 37.96 | 9.4 |
| Os03t0296000-00 | Rice | nucleus | 4.63 | 4.85 |
| Os01t0685400-01 | Rice | nucleus | 4.63 | 2.14 |
| CDY40299 | Canola | nucleus | 2.78 | 1.5 |
Protein Annotations
| EnsemblPlants:Os12t0633501-00 | EnsemblPlantsGene:Os12g0633501 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF928 | ProteinID:BAT18233.1 | SEG:seg |
| SUPFAM:SSF46689 | UniParc:UPI0003939829 | UniProt:A0A0P0YCS2 | MapMan:35.1 | : | : |
Description
Similar to MYB36 (myb domain protein 36); DNA binding / transcription factor. (Os12t0633501-00)
Coordinates
chr12:+:27151981..27152307
Molecular Weight (calculated)
11635.0 Da
IEP (calculated)
11.094
GRAVY (calculated)
-0.246
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGRRAAA VVHPAARHRR QLDGLRRCGK SCRLRWLNYL RPGIRHGAFS DHDDRLILAL HAAVGTRPVL LLAAHQLHVA STSSGGMHVG VGEEGRGYDD
101: VFAAGHSL
101: VFAAGHSL
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
Arabidopsis Description
RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.