Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09184 | Canola | nucleus | 100.0 | 60.79 |
| CDY50326 | Canola | nucleus | 80.0 | 47.9 |
| CDY26977 | Canola | nucleus | 77.5 | 45.59 |
| TraesCS4D01G360600.1 | Wheat | nucleus | 9.0 | 6.74 |
| TraesCS5A01G534400.1 | Wheat | nucleus | 9.0 | 6.72 |
| TraesCS4B01G366600.1 | Wheat | nucleus | 8.5 | 6.3 |
| TraesCS3D01G286300.1 | Wheat | nucleus | 8.5 | 5.88 |
| TraesCS3A01G286600.1 | Wheat | nucleus | 8.5 | 5.84 |
| HORVU3Hr1G068550.1 | Barley | nucleus | 5.5 | 5.05 |
| TraesCS3B01G320800.1 | Wheat | nucleus, plastid | 9.0 | 4.92 |
| HORVU4Hr1G087730.1 | Barley | nucleus | 5.0 | 4.59 |
| CDY25898 | Canola | nucleus | 7.0 | 4.32 |
| CDX88631 | Canola | nucleus | 6.5 | 3.93 |
| CDY11860 | Canola | nucleus | 6.5 | 3.89 |
| OQU79721 | Sorghum | nucleus | 4.5 | 3.7 |
| Zm00001d011739_P001 | Maize | nucleus | 5.0 | 3.45 |
| TraesCS3D01G109800.1 | Wheat | nucleus | 4.5 | 3.37 |
| Zm00001d039496_P001 | Maize | nucleus | 4.0 | 3.2 |
| TraesCS5D01G242200.1 | Wheat | nucleus | 3.0 | 3.17 |
| Zm00001d043611_P001 | Maize | nucleus | 5.0 | 3.16 |
| CDX86430 | Canola | nucleus | 5.0 | 3.1 |
| CDY08162 | Canola | nucleus | 4.5 | 3.0 |
| TraesCS3A01G108000.1 | Wheat | nucleus | 4.0 | 3.0 |
| CDY52538 | Canola | nucleus | 5.5 | 2.98 |
| CDY37840 | Canola | nucleus | 5.5 | 2.96 |
| TraesCS3B01G126800.1 | Wheat | nucleus | 4.0 | 2.96 |
| Os12t0633501-00 | Rice | mitochondrion | 1.5 | 2.78 |
| CDY45629 | Canola | nucleus | 5.0 | 2.72 |
| CDY08748 | Canola | nucleus | 5.0 | 2.72 |
| CDY65680 | Canola | nucleus | 4.0 | 2.67 |
| CDY33205 | Canola | nucleus | 3.5 | 2.43 |
| CDX79698 | Canola | nucleus | 3.5 | 2.42 |
| HORVU3Hr1G019590.2 | Barley | nucleus | 3.0 | 2.23 |
| CDY18676 | Canola | nucleus | 3.5 | 2.23 |
| CDX75005 | Canola | nucleus | 3.0 | 2.08 |
| CDY46743 | Canola | nucleus | 3.0 | 2.08 |
| CDX69328 | Canola | nucleus | 3.0 | 1.97 |
| CDY60980 | Canola | nucleus | 3.0 | 1.91 |
| CDY64987 | Canola | nucleus | 2.0 | 1.67 |
| CDY57424 | Canola | nucleus | 2.5 | 1.56 |
| CDY17391 | Canola | nucleus | 2.5 | 1.56 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 4.5 | 1.38 |
| CDY08749 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY40299 | EnsemblPlantsGene:GSBRNA2T00069475001 | ProteinID:CDY40299 | ProteinID:CDY40299.1 | SEG:seg | UniParc:UPI0004EDFAC8 |
| UniProt:A0A078HSN2 | MapMan:35.1 | : | : | : | : |
Description
BnaA10g27690DBnaA10g27690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSN2]
Coordinates
chrLK032468:+:10286..10888
Molecular Weight (calculated)
22008.2 Da
IEP (calculated)
5.780
GRAVY (calculated)
-0.672
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPFLNPNS QDVKRPSTTI SPSSYNPYFE NPTKALISNI DGFEADNHQI FPFVNPNYPQ DISLSESSNN NISGTSGFSL NHNMCGHYSN HNHFSSDVSG
101: NRSEIIMKQE EIMMLMMIDN HIDQRTKGYN GDFTQGYYSN FINGHGDLKQ MISGTGTNSN INMGGSGSES ASSSSSISNL AENKSSGSLL QHKCLPYFYS
101: NRSEIIMKQE EIMMLMMIDN HIDQRTKGYN GDFTQGYYSN FINGHGDLKQ MISGTGTNSN INMGGSGSES ASSSSSISNL AENKSSGSLL QHKCLPYFYS
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
Arabidopsis Description
RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.