Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G360600.1 | Wheat | nucleus | 71.43 | 50.56 |
| TraesCS3D01G286300.1 | Wheat | nucleus | 75.66 | 49.48 |
| Os01t0722300-01 | Rice | nucleus | 67.2 | 42.62 |
| Zm00001d011739_P001 | Maize | nucleus | 58.73 | 38.28 |
| EES01384 | Sorghum | nucleus | 62.43 | 37.11 |
| Zm00001d043611_P001 | Maize | nucleus | 58.73 | 35.13 |
| TraesCS3D01G109800.1 | Wheat | nucleus | 44.44 | 31.46 |
| TraesCS1D01G387100.1 | Wheat | nucleus | 48.15 | 29.55 |
| TraesCS7D01G407500.1 | Wheat | nucleus | 40.21 | 28.68 |
| TraesCS3D01G265100.1 | Wheat | nucleus | 44.97 | 28.24 |
| TraesCS5D01G225800.1 | Wheat | nucleus | 45.5 | 27.22 |
| TraesCS1D01G252300.1 | Wheat | nucleus | 29.1 | 27.09 |
| TraesCS5D01G415800.1 | Wheat | nucleus | 43.92 | 26.69 |
| TraesCS4D01G192400.1 | Wheat | nucleus | 39.15 | 24.03 |
| TraesCS2D01G068000.1 | Wheat | nucleus | 42.33 | 22.92 |
| TraesCS1D01G204500.1 | Wheat | nucleus | 29.63 | 22.49 |
| TraesCS6D01G327300.1 | Wheat | nucleus | 41.8 | 21.64 |
| TraesCS2D01G331700.1 | Wheat | nucleus | 38.1 | 20.45 |
| CDY40299 | Canola | nucleus | 3.17 | 3.0 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G242200.1 | EnsemblPlantsGene:TraesCS5D01G242200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF566 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:350952382..350954256
Molecular Weight (calculated)
20557.7 Da
IEP (calculated)
9.331
GRAVY (calculated)
-0.376
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSPCCDKA RVKRGAWSRE EDAILTTFVA RFANAGNWTT LPHKAGLRRC GKSCRLRWLN YLRPALRRGG FTEEEDGLIL SLYGHIGSKW SAIAAKLPGR
101: TDNDVKNHWS TKLKKRHVML MSTAAAPSTP PAGVAPPATP PPALVDLEAA LATVDDGGEL TCEAEQLYAE LMGLIEQQPT GHGQQRSLL
101: TDNDVKNHWS TKLKKRHVML MSTAAAPSTP PAGVAPPATP PPALVDLEAA LATVDDGGEL TCEAEQLYAE LMGLIEQQPT GHGQQRSLL
001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
Arabidopsis Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.