Factsheet for TraesCS1D01G252300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G265400.1	Wheat	nucleus	96.06	61.32
HORVU1Hr1G061220.1	Barley	nucleus	92.12	58.99
TraesCS1A01G252600.1	Wheat	nucleus	92.61	58.57
Os08t0248700-01	Rice	nucleus	70.44	45.25
EES14801	Sorghum	nucleus	70.94	45.0
Zm00001d050185_P002	Maize	nucleus	68.97	41.92
TraesCS5D01G242200.1	Wheat	nucleus	27.09	29.1
TraesCS5D01G225800.1	Wheat	nucleus	43.35	27.85
TraesCS7D01G407500.1	Wheat	nucleus	35.96	27.55
VIT_11s0052g01490.t01	Wine grape	nucleus	48.28	26.85
GSMUA_Achr7P19530_001	Banana	nucleus	44.83	26.69
CDY25898	Canola	nucleus	40.89	25.62
TraesCS6D01G327300.1	Wheat	nucleus	45.81	25.48
TraesCS5D01G415800.1	Wheat	nucleus	38.92	25.4
Bra020428.1-P	Field mustard	nucleus	41.38	25.3
AT5G57620.1	Thale cress	nucleus	40.89	24.92
CDY11860	Canola	nucleus	40.89	24.85
Bra006811.1-P	Field mustard	nucleus	40.39	24.77
CDX88631	Canola	nucleus	40.39	24.77
TraesCS3D01G109800.1	Wheat	nucleus	31.03	23.6
TraesCS3D01G265100.1	Wheat	nucleus	34.48	23.26
TraesCS4D01G360600.1	Wheat	nucleus	30.05	22.85
TraesCS1D01G387100.1	Wheat	nucleus	33.99	22.4
TraesCS3D01G286300.1	Wheat	nucleus	31.03	21.8
TraesCS2D01G068000.1	Wheat	nucleus	37.44	21.78
TraesCS4D01G192400.1	Wheat	nucleus	30.05	19.81
TraesCS1D01G204500.1	Wheat	nucleus	23.15	18.88
TraesCS2D01G331700.1	Wheat	nucleus	30.54	17.61

Protein Annotations

EnsemblPlants:TraesCS1D01G252300.1	EnsemblPlantsGene:TraesCS1D01G252300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:344606024..344607218

Molecular Weight (calculated)

22351.9 Da

IEP (calculated)

4.519

GRAVY (calculated)

-0.530

Length

203 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN YLRPNIKHGD FTPEEDSTIC KLYISIGSSR SSSFDVTVAA
101: EQGQSSSLND QNLGGQQQME TTATMDGLAS PSSAGNSNIV TIEAELQELL YSATTTTTDS VVTQQGGVDW WSYEQGRSPV NCWDFTPETS SVLQDYTSVV
201: YDM

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.