Factsheet for TraesCS1D01G204500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G201100.1	Wheat	nucleus	96.79	92.34
TraesCS1B01G215500.1	Wheat	nucleus	91.57	88.03
HORVU1Hr1G051980.2	Barley	nucleus	81.93	82.59
KXG38237	Sorghum	nucleus	51.0	49.61
Zm00001d013931_P001	Maize	nucleus	51.0	46.52
TraesCS5D01G242200.1	Wheat	nucleus	22.49	29.63
GSMUA_Achr4P01050_001	Banana	nucleus	25.3	27.88
GSMUA_Achr1P04910_001	Banana	nucleus	25.3	25.93
TraesCS3D01G109800.1	Wheat	nucleus	26.91	25.09
GSMUA_Achr7P25060_001	Banana	nucleus	29.32	25.0
VIT_04s0008g00620.t01	Wine grape	nucleus	26.1	24.62
TraesCS7D01G407500.1	Wheat	nucleus	25.7	24.15
TraesCS5D01G415800.1	Wheat	nucleus	30.12	24.12
KRH15488	Soybean	nucleus	28.51	23.51
KRH05529	Soybean	nucleus	28.92	23.3
TraesCS1D01G252300.1	Wheat	nucleus	18.88	23.15
TraesCS4D01G360600.1	Wheat	nucleus	24.5	22.85
TraesCS5D01G225800.1	Wheat	nucleus	27.71	21.84
TraesCS3D01G286300.1	Wheat	nucleus	24.9	21.45
TraesCS4D01G192400.1	Wheat	nucleus	26.1	21.1
TraesCS3D01G265100.1	Wheat	nucleus	25.3	20.93
TraesCS6D01G327300.1	Wheat	nucleus	28.92	19.73
TraesCS2D01G068000.1	Wheat	nucleus	27.31	19.48
TraesCS1D01G387100.1	Wheat	nucleus	24.1	19.48
TraesCS2D01G331700.1	Wheat	nucleus	26.91	19.03

Protein Annotations

EnsemblPlants:TraesCS1D01G204500.1	EnsemblPlantsGene:TraesCS1D01G204500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF933	PFAM:PF13921	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:289774736..289776213

Molecular Weight (calculated)

27424.6 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.407

Length

249 amino acids

Sequence
(BLAST)

001: MMKKGKWSRE EDDFLKKHIE KYGIGRSWQA LAETLGLQRC GRGCRARWLN YLRPGLKHGN FTQAEESIIC EMYSKRGSCW SVIAAQLPGR TDLAVKNYWN
101: GTISKRFHWA SSAAAARRRR SVHRPSSSTT SDATKPEELA LVVHGEGSST TGSSCYAGGF VDARVLAGSL PLVQARPPLA AGGWNAAKEE VGETVPIERK
201: PAVAPAPLPE NDMVCAPMTV IPLASMEPDD MPWIDGFDEI DSFLPWFDD

Best Arabidopsis Sequence Match ( AT4G37780.1 )
(BLAST)

001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE

Arabidopsis Description

MYB87Transcription factor MYB87 [Source:UniProtKB/Swiss-Prot;Acc:F4JSU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.