Factsheet for TraesCS2D01G068000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G069300.1	Wheat	nucleus	95.42	95.69
TraesCS2B01G082400.1	Wheat	nucleus	95.7	95.16
HORVU2Hr1G010450.2	Barley	nucleus	95.42	94.87
EES10507	Sorghum	nucleus	60.46	59.77
Zm00001d004126_P001	Maize	nucleus	57.88	56.11
TraesCS5D01G242200.1	Wheat	nucleus	22.92	42.33
TraesCS7D01G407500.1	Wheat	nucleus	30.37	40.0
TraesCS1D01G252300.1	Wheat	nucleus	21.78	37.44
Solyc06g074910.2.1	Tomato	nucleus	32.09	37.09
TraesCS3D01G265100.1	Wheat	nucleus	31.52	36.54
KRH26521	Soybean	nucleus	34.96	35.88
KRH22841	Soybean	nucleus	34.96	35.88
TraesCS5D01G415800.1	Wheat	nucleus	31.52	35.37
KRH25089	Soybean	nucleus	31.52	34.92
KRH41459	Soybean	nucleus	19.48	34.34
TraesCS6D01G327300.1	Wheat	nucleus	35.82	34.25
Solyc06g074920.1.1	Tomato	nucleus	28.65	33.9
TraesCS5D01G225800.1	Wheat	nucleus	30.66	33.86
KRH30589	Soybean	nucleus	31.81	33.74
TraesCS3D01G109800.1	Wheat	nucleus	25.5	33.33
TraesCS4D01G360600.1	Wheat	nucleus	24.64	32.21
TraesCS1D01G387100.1	Wheat	nucleus	28.37	32.14
TraesCS3D01G286300.1	Wheat	nucleus	24.93	30.1
PGSC0003DMT400020979	Potato	nucleus	16.62	29.15
TraesCS4D01G192400.1	Wheat	nucleus	25.21	28.57
TraesCS1D01G204500.1	Wheat	nucleus	19.48	27.31
TraesCS2D01G331700.1	Wheat	nucleus	24.07	23.86

Protein Annotations

EnsemblPlants:TraesCS2D01G068000.1	EnsemblPlantsGene:TraesCS2D01G068000	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF687	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:28550792..28553162

Molecular Weight (calculated)

38003.7 Da

IEP (calculated)

8.395

GRAVY (calculated)

-0.672

Length

349 amino acids

Sequence
(BLAST)

001: MGRAPCCDKN NVKKGPWSPE EDAKLKEFMD KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNIKHGE FTEHEDRVIC SMYASIGSRW SIIASQLPGR
101: TDNDIKNYWN TKLKKKLLGS TTMAGVGPPP RAPRQNHHQH RPVLLPYSSS PHSNYSNFFP GAGALLQQSA EPLTLQAQDH YMLGSSGSLN HMNNNNNGAS
201: AVQLQLLHAT AAHRQLQVKE ECGSGGAMIA FGCGDQQSCS SSDGTQYAGG QYVHGGRHHG KEMSFDNNNG YSAYGVYGSG AGAVEQEHKL SFQLQHQQEQ
301: QQAQLDYSYE EIKQLLMTAA ASGADGGGGL IHDPELIGAH AATGKLTMM

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.