Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069030.1.1 | Tomato | nucleus | 93.97 | 59.37 |
| PGSC0003DMT400009926 | Potato | nucleus | 30.65 | 20.33 |
| PGSC0003DMT400005085 | Potato | nucleus | 30.15 | 20.0 |
| PGSC0003DMT400035941 | Potato | nucleus | 16.58 | 18.03 |
| TraesCS2A01G069300.1 | Wheat | nucleus | 29.15 | 16.67 |
| TraesCS2D01G068000.1 | Wheat | nucleus | 29.15 | 16.62 |
| HORVU2Hr1G010450.2 | Barley | nucleus | 29.15 | 16.52 |
| TraesCS2B01G082400.1 | Wheat | nucleus | 28.64 | 16.24 |
| PGSC0003DMT400000932 | Potato | nucleus | 23.12 | 15.92 |
| Zm00001d004126_P001 | Maize | nucleus | 28.14 | 15.56 |
| PGSC0003DMT400012702 | Potato | nucleus | 24.62 | 14.89 |
| PGSC0003DMT400055148 | Potato | nucleus | 24.12 | 14.55 |
| PGSC0003DMT400022009 | Potato | nucleus | 21.11 | 14.33 |
| KRH41459 | Soybean | nucleus | 13.57 | 13.64 |
| PGSC0003DMT400048261 | Potato | nucleus | 24.12 | 13.04 |
| PGSC0003DMT400022402 | Potato | nucleus | 17.09 | 10.37 |
| PGSC0003DMT400062839 | Potato | nucleus | 6.53 | 4.23 |
| OQU75617 | Sorghum | nucleus | 5.53 | 3.5 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020979 | EnsemblPlantsGene:PGSC0003DMG400008123 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF506 | PFAM:PF00249 | PFscan:PS50090 | PGSC:PGSC0003DMG400008123 | SEG:seg | SUPFAM:SSF46689 |
| UniParc:UPI00029492D7 | UniProt:M1AEE3 | MapMan:35.1 | : | : | : |
Description
Blind [Source:PGSC_GENE;Acc:PGSC0003DMG400008123]
Coordinates
chr11:+:40944871..40946417
Molecular Weight (calculated)
22247.8 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.682
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KFGTAGNWIA LPQKAGQEQP IIIPSAQQNI MYTNNNNNLM MIANNLQNYP NFGATNYNLQ NYPNFGEVAS
101: CSSSDGSYCS QMSFGTNKDI ISIKREEIMS FGHHDGAIYE EINNQQFNFG YFGNTMQEIA TSCCTNGNSG STTHSSNNLL LYNNDENCNK SNEMGMFYY
101: CSSSDGSYCS QMSFGTNKDI ISIKREEIMS FGHHDGAIYE EINNQQFNFG YFGNTMQEIA TSCCTNGNSG STTHSSNNLL LYNNDENCNK SNEMGMFYY
001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY
Arabidopsis Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.