Factsheet for PGSC0003DMT400062839

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113530.2.1	Tomato	nucleus	96.09	83.1
KRH63439	Soybean	nucleus	35.18	40.6
KRH54481	Soybean	nucleus	40.39	37.58
VIT_17s0000g05400.t01	Wine grape	nucleus	32.25	32.35
PGSC0003DMT400022009	Potato	nucleus	24.76	25.94
GSMUA_Achr3P10060_001	Banana	nucleus	24.1	23.12
HORVU4Hr1G055680.1	Barley	nucleus	22.15	22.52
TraesCS4B01G191200.1	Wheat	nucleus	22.48	22.4
TraesCS4D01G192400.1	Wheat	nucleus	22.48	22.4
TraesCS4A01G113000.1	Wheat	nucleus	22.15	22.15
Zm00001d028777_P001	Maize	nucleus	22.15	21.32
OQU92760	Sorghum	nucleus	22.48	21.04
PGSC0003DMT400022402	Potato	nucleus	20.52	19.21
PGSC0003DMT400000932	Potato	nucleus	17.92	19.03
PGSC0003DMT400005085	Potato	nucleus	18.57	19.0
PGSC0003DMT400055148	Potato	nucleus	20.2	18.79
PGSC0003DMT400009926	Potato	nucleus	18.24	18.67
PGSC0003DMT400035941	Potato	nucleus	11.07	18.58
PGSC0003DMT400012702	Potato	nucleus	18.24	17.02
PGSC0003DMT400048261	Potato	nucleus	19.22	16.03
Os03t0296000-00	Rice	nucleus	2.61	7.77
PGSC0003DMT400020979	Potato	nucleus	4.23	6.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400062839	EnsemblPlantsGene:PGSC0003DMG400024461	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF716	PFAM:PF00249	PFscan:PS51294	PGSC:PGSC0003DMG400024461	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00029579F5	UniProt:M1C9L3	MapMan:15.5.2.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024461]

Coordinates

chr3:+:53449065..53450718

Molecular Weight (calculated)

34495.3 Da

IEP (calculated)

5.421

GRAVY (calculated)

-0.604

Length

307 amino acids

Sequence
(BLAST)

001: MSKKSGYGRS QKQRWNNRLK PDLKQDSFTP QEEELIIKLH ATIGSRWSII AQQLAGRTDN DVKNLWNTKL KKKLSAMGID PVTHKPFSQI LTDYGNIGGF
101: PKARTRFVSL NRELKGAFMS RPEQLQHSLQ NFQNFNSLCV KLPKTEASEE CFFSNNQDSS NINQPPVDLF SELQAIKFVT EASNYNYPKA VFSHHPIPIT
201: DCSTSSPLSS SSSSSASHSL AENQVNWCDY LLDDAFLPSN FKDQEDTLTI EEKLVCGGGE DGSNNVPSMK DFETSLSTKG TSFVEAMLEC ENEMFLNFPG
301: LSEDPFY

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.