Factsheet for PGSC0003DMT400022402

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005760.1.1	Tomato	nucleus	96.04	93.75
VIT_19s0015g01280.t01	Wine grape	nucleus	70.12	69.7
CDY64987	Canola	nucleus	49.7	68.2
KRG98401	Soybean	nucleus	66.16	66.56
KRH46482	Soybean	nucleus	65.24	65.85
TraesCS2D01G331700.1	Wheat	nucleus	61.59	57.39
TraesCS2B01G351000.1	Wheat	nucleus	61.59	57.39
TraesCS2A01G331200.1	Wheat	nucleus	60.98	56.82
AT5G56110.1	Thale cress	nucleus	55.18	56.56
Bra035604.1-P	Field mustard	nucleus	54.27	55.62
Bra002847.1-P	Field mustard	nucleus	53.96	55.31
CDY17391	Canola	nucleus	53.96	55.31
CDY57424	Canola	nucleus	53.96	55.31
Zm00001d025664_P001	Maize	nucleus	58.54	53.93
EES12341	Sorghum	nucleus	58.84	52.02
HORVU2Hr1G081720.2	Barley	nucleus	47.56	50.0
PGSC0003DMT400022009	Potato	nucleus	32.93	36.86
PGSC0003DMT400035941	Potato	nucleus	17.68	31.69
PGSC0003DMT400009926	Potato	nucleus	28.66	31.33
PGSC0003DMT400005085	Potato	nucleus	28.05	30.67
PGSC0003DMT400000932	Potato	nucleus	26.22	29.76
PGSC0003DMT400012702	Potato	nucleus	28.66	28.57
PGSC0003DMT400055148	Potato	nucleus	27.44	27.27
PGSC0003DMT400048261	Potato	nucleus	27.44	24.46
PGSC0003DMT400062839	Potato	nucleus	19.21	20.52
PGSC0003DMT400020979	Potato	nucleus	10.37	17.09

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102579549	MapMan:15.5.2.1	MapMan:21.8.1.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1AGN4
InterPro:Myb_dom	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400008687	PGSC:PGSC0003DMG400008687	EnsemblPlants:PGSC0003DMT400022402	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000294BDEB
RefSeq:XP_006352557.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008687]

Coordinates

chr10:-:824948..826717

Molecular Weight (calculated)

36884.2 Da

IEP (calculated)

7.808

GRAVY (calculated)

-0.795

Length

328 amino acids

Sequence
(BLAST)

001: MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY LRPDLKHGQF SEGEEQTIVT LHSVLGNRWS VIAAQLPGRT
101: DNDVKNHWNT KLKKKLSGMG IDPVTHKPFS HLISEIATTL SPPQVPHLAE AALGCFKDEM LHLLTKKRLG FQFHQQFTNM TITHNNAPST SHVKHEENNN
201: YKDNTIEKIK YGLSRAIKES DKNWETSVGG ATSSNFHDNT GFSNYNFGNL LNDEEGSPWN QSLCSGSTCT AGGGELQQQQ QNKKISNENC EDSGKEIVAT
301: TRNGSTTMFN SDCVLWDISS DDLMNPMV

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.