Factsheet for Bra002847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17391	Canola	nucleus	99.06	99.06
CDY57424	Canola	nucleus	98.12	98.12
AT5G56110.1	Thale cress	nucleus	92.81	92.81
Bra035604.1-P	Field mustard	nucleus	92.19	92.19
VIT_19s0015g01280.t01	Wine grape	nucleus	59.69	57.88
KRH46482	Soybean	nucleus	58.12	57.23
KRG98401	Soybean	nucleus	58.12	57.06
PGSC0003DMT400022402	Potato	nucleus	55.31	53.96
Solyc10g005760.1.1	Tomato	nucleus	56.25	53.57
TraesCS2A01G331200.1	Wheat	nucleus	57.81	52.56
TraesCS2D01G331700.1	Wheat	nucleus	57.81	52.56
TraesCS2B01G351000.1	Wheat	nucleus	57.5	52.27
Zm00001d025664_P001	Maize	nucleus	56.56	50.84
EES12341	Sorghum	nucleus	57.81	49.87
HORVU2Hr1G081720.2	Barley	nucleus	48.12	49.36
Bra025337.1-P	Field mustard	nucleus	32.19	31.89
Bra023085.1-P	Field mustard	nucleus	26.88	29.76
Bra005234.1-P	Field mustard	nucleus	26.56	29.51
Bra011785.1-P	Field mustard	nucleus	27.5	28.85
Bra017963.1-P	Field mustard	nucleus	26.25	28.0
Bra017218.1-P	Field mustard	nucleus	25.0	27.59
Bra006811.1-P	Field mustard	nucleus	27.19	26.28
Bra020428.1-P	Field mustard	nucleus	27.19	26.2
Bra020228.1-P	Field mustard	nucleus	26.25	25.53
Bra037828.1-P	Field mustard	nucleus	25.0	25.48
Bra002448.1-P	Field mustard	nucleus	26.25	25.15
Bra031847.1-P	Field mustard	nucleus	26.88	23.18
Bra024419.1-P	Field mustard	nucleus	26.56	23.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:21.8.1.1	EnsemblPlantsGene:Bra002847	EnsemblPlants:Bra002847.1	EnsemblPlants:Bra002847.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M4CF65	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000254484F	SEG:seg

Description

AT5G56110 (E=5e-153) ATMYB80, ATMYB103, MYB103, MS188 | ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103); DNA binding / transcription factor

Coordinates

chrA10:+:7182999..7184475

Molecular Weight (calculated)

35847.3 Da

IEP (calculated)

7.703

GRAVY (calculated)

-0.721

Length

320 amino acids

Sequence
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGIG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSSPN PNNFNRTVDN EAGKMKMDGL
201: ENGNGIMKLW DMGNGFSYGS SSSSFGNEDK NDGAASPAVA AWRGHGGIRT AVAETAAAEE EERRKLKGEV VDQEENGSQG GRGDGMLMMR SQHDQHQHHV
301: FNVDNVLWDL QADDLINHVV

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.