Factsheet for Bra017218.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005234.1-P	Field mustard	nucleus	83.45	84.03
Bra023085.1-P	Field mustard	nucleus	83.1	83.39
AT2G36890.2	Thale cress	nucleus	82.76	70.8
Bra017963.1-P	Field mustard	nucleus	36.21	35.0
Bra037828.1-P	Field mustard	nucleus	37.24	34.39
Bra020428.1-P	Field mustard	nucleus	39.31	34.34
Bra006811.1-P	Field mustard	nucleus	38.97	34.14
Bra011785.1-P	Field mustard	nucleus	35.52	33.77
Bra002448.1-P	Field mustard	nucleus	36.55	31.74
Bra020228.1-P	Field mustard	nucleus	35.52	31.31
Bra024419.1-P	Field mustard	nucleus	39.31	30.98
Bra031847.1-P	Field mustard	nucleus	38.97	30.46
Bra002847.1-P	Field mustard	nucleus	27.59	25.0
Bra035604.1-P	Field mustard	nucleus	27.24	24.69
Bra025337.1-P	Field mustard	nucleus	26.9	24.15

Protein Annotations

EnsemblPlants:Bra017218.1	EnsemblPlants:Bra017218.1-P	EnsemblPlantsGene:Bra017218	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000254424F	UniProt:M4DL37	MapMan:15.5.2.1	:	:

Description

AT2G36890 (E=3e-115) RAX2, MYB38, ATMYB38, BIT1 | RAX2 (REGULATOR OF AXILLARY MERISTEMS 2); DNA binding / transcription factor

Coordinates

chrA04:+:15959611..15961024

Molecular Weight (calculated)

32730.6 Da

IEP (calculated)

7.840

GRAVY (calculated)

-0.720

Length

290 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPD EDATLKDYIE KQGTGGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNLRHGD FTEEEDKIIC SLFASIGSRW SVIAAHLHGR
101: TDNDIKNYWN TKLKKKIIAT MALPPPHHLL AIASSSSSPS SSSQYNMINS FPYYNPSACT NELITPNQGM MTMMDQQQHL LYQEDMGNLG NSPSSNKLIM
201: SHQEDSPKQS ASKGIMLLSD VRSGSSSTTS TVARVKSKHH DYHHEEEVRS MEDYGMDEIK QLISSNCTSS SSNSLWFDEN KTEDKFMMYY

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.