Factsheet for Bra025337.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86430	Canola	nucleus	100.0	100.0
AT3G28470.1	Thale cress	nucleus	84.21	85.8
Solyc03g059200.1.1	Tomato	nucleus	46.44	57.03
PGSC0003DMT400022009	Potato	nucleus	45.82	50.51
KRG93460	Soybean	nucleus	51.7	48.41
CDX85201	Canola	endoplasmic reticulum, vacuole	92.26	45.57
KRH18536	Soybean	endoplasmic reticulum	52.01	44.8
Os03t0296000-00	Rice	nucleus	13.93	43.69
GSMUA_Achr3P10060_001	Banana	nucleus	38.7	39.06
VIT_14s0066g02180.t01	Wine grape	nucleus	52.63	38.99
HORVU4Hr1G055680.1	Barley	nucleus	34.98	37.42
TraesCS4D01G192400.1	Wheat	nucleus	35.6	37.34
TraesCS4B01G191200.1	Wheat	nucleus	35.29	37.01
TraesCS4A01G113000.1	Wheat	nucleus	34.98	36.81
Zm00001d028777_P001	Maize	nucleus	34.06	34.48
OQU92760	Sorghum	nucleus	34.98	34.45
Bra035604.1-P	Field mustard	nucleus	31.89	32.19
Bra002847.1-P	Field mustard	nucleus	31.89	32.19
Bra005234.1-P	Field mustard	nucleus	25.7	28.82
Bra023085.1-P	Field mustard	nucleus	25.39	28.37
Bra011785.1-P	Field mustard	nucleus	26.32	27.87
Bra017218.1-P	Field mustard	nucleus	24.15	26.9
Bra017963.1-P	Field mustard	nucleus	24.77	26.67
Bra020428.1-P	Field mustard	nucleus	26.63	25.9
Bra006811.1-P	Field mustard	nucleus	26.32	25.68
Bra037828.1-P	Field mustard	nucleus	24.77	25.48
Bra020228.1-P	Field mustard	nucleus	25.7	25.23
Bra002448.1-P	Field mustard	nucleus	25.7	24.85
Bra024419.1-P	Field mustard	nucleus	26.01	22.83
Bra031847.1-P	Field mustard	nucleus	26.01	22.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra025337	EnsemblPlants:Bra025337.1	EnsemblPlants:Bra025337.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908
GO:GO:0048658	GO:GO:0052545	GO:GO:0055046	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4E981
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF716	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000253FB68	SEG:seg	:	:

Description

AT3G28470 (E=3e-141) ATMYB35, TDF1 | TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1); DNA binding / transcription factor

Coordinates

chrA06:+:22102765..22103903

Molecular Weight (calculated)

35922.9 Da

IEP (calculated)

8.172

GRAVY (calculated)

-0.600

Length

323 amino acids

Sequence
(BLAST)

001: MGRPPCCDKS NVKKGLWTAE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF SPQEEELIIQ CHRIIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKRLVKMG IDPVTHKPVS QVLTEFRNIS GHGNSSEPFV RNFKTEPSNN SILTQSNSAW EMMRNTTSHE SYHNSPMIFT HPTSSEFHFS
201: NHSNFPLNGA TSSCSSSSSS ASITQPNQGA QAPVTTFCWS DYLLSDPVLP LSSQTQVVGS SATSNLTFAQ NENFNSQGEC SSQKIASKAS GTCHSASSFV
301: DEILDKDQEM LSQFPQLLND FDY

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.