Factsheet for Bra035604.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64987	Canola	nucleus	74.69	100.0
AT5G56110.1	Thale cress	nucleus	92.19	92.19
Bra002847.1-P	Field mustard	nucleus	92.19	92.19
VIT_19s0015g01280.t01	Wine grape	nucleus	60.62	58.79
KRH46482	Soybean	nucleus	59.06	58.15
KRG98401	Soybean	nucleus	59.06	57.98
PGSC0003DMT400022402	Potato	nucleus	55.62	54.27
Solyc10g005760.1.1	Tomato	nucleus	56.56	53.87
TraesCS2D01G331700.1	Wheat	nucleus	58.44	53.12
TraesCS2A01G331200.1	Wheat	nucleus	58.44	53.12
TraesCS2B01G351000.1	Wheat	nucleus	58.12	52.84
Zm00001d025664_P001	Maize	nucleus	57.81	51.97
EES12341	Sorghum	nucleus	59.06	50.94
HORVU2Hr1G081720.2	Barley	nucleus	49.06	50.32
Bra025337.1-P	Field mustard	nucleus	32.19	31.89
Bra023085.1-P	Field mustard	nucleus	26.56	29.41
Bra005234.1-P	Field mustard	nucleus	26.25	29.17
Bra011785.1-P	Field mustard	nucleus	27.5	28.85
Bra017963.1-P	Field mustard	nucleus	25.94	27.67
Bra017218.1-P	Field mustard	nucleus	24.69	27.24
Bra006811.1-P	Field mustard	nucleus	26.56	25.68
Bra020428.1-P	Field mustard	nucleus	26.56	25.6
Bra020228.1-P	Field mustard	nucleus	25.94	25.23
Bra037828.1-P	Field mustard	nucleus	24.69	25.16
Bra002448.1-P	Field mustard	nucleus	25.94	24.85
Bra031847.1-P	Field mustard	nucleus	26.56	22.91
Bra024419.1-P	Field mustard	nucleus	26.25	22.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:21.8.1.1	EnsemblPlantsGene:Bra035604	EnsemblPlants:Bra035604.1	EnsemblPlants:Bra035604.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M4F3F4	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00025462A8	SEG:seg

Description

AT5G56110 (E=1e-136) ATMYB80, ATMYB103, MYB103, MS188 | ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103); DNA binding / transcription factor

Coordinates

chrA02:-:7344063..7345709

Molecular Weight (calculated)

36107.5 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.808

Length

320 amino acids

Sequence
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SDAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSSPN HNHNPNNFNQ IVDNEAGKMK
201: LDNGNGIMKL WDMGNGFSYG SSSSSFGNDE RNEGSASPAV AAWRGHGGIR TSVAETAAAE EEERRKLKGE VMEQEEIGSE GGRGDGMMMR RQHDQHQQHA
301: FNVDNDLWDL QADDLINHMV

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.