Factsheet for VIT_19s0015g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98401	Soybean	nucleus	78.48	79.45
KRH46482	Soybean	nucleus	76.97	78.15
CDY64987	Canola	nucleus	53.33	73.64
PGSC0003DMT400022402	Potato	nucleus	69.7	70.12
Solyc10g005760.1.1	Tomato	nucleus	69.39	68.15
TraesCS2D01G331700.1	Wheat	nucleus	67.88	63.64
TraesCS2A01G331200.1	Wheat	nucleus	67.88	63.64
TraesCS2B01G351000.1	Wheat	nucleus	67.58	63.35
AT5G56110.1	Thale cress	nucleus	59.39	61.25
Bra035604.1-P	Field mustard	nucleus	58.79	60.62
CDY17391	Canola	nucleus	58.18	60.0
Bra002847.1-P	Field mustard	nucleus	57.88	59.69
CDY57424	Canola	nucleus	57.88	59.69
Zm00001d025664_P001	Maize	nucleus	64.24	59.55
EES12341	Sorghum	nucleus	65.15	57.95
HORVU2Hr1G081720.2	Barley	nucleus	52.73	55.77
VIT_17s0000g05400.t01	Wine grape	nucleus	33.64	36.27
VIT_04s0008g00620.t01	Wine grape	nucleus	26.06	32.58
VIT_11s0016g02780.t01	Wine grape	nucleus	25.45	29.47
VIT_06s0061g00470.t01	Wine grape	nucleus	26.06	27.13
VIT_14s0066g02180.t01	Wine grape	nucleus	35.15	26.61
VIT_18s0001g08470.t01	Wine grape	nucleus	27.27	26.47
VIT_00s1352g00010.t01	Wine grape	nucleus	26.97	26.25
VIT_08s0007g05030.t01	Wine grape	nucleus	25.45	24.56
VIT_11s0052g01490.t01	Wine grape	nucleus	26.97	24.38

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100265285	wikigene:100265285	MapMan:15.5.2.1	MapMan:21.8.1.1	ProteinID:CBI39810
ProteinID:CBI39810.3	UniProt:D7UAP5	EMBL:FN596747	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100265285	wikigene:LOC100265285	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BE5435
ArrayExpress:VIT_19s0015g01280	EnsemblPlantsGene:VIT_19s0015g01280	EnsemblPlants:VIT_19s0015g01280.t01	unigene:Vvi.5500	RefSeq:XP_002268897	RefSeq:XP_002268897.1

Description

No Description!

Coordinates

chr19:-:9479676..9482388

Molecular Weight (calculated)

36384.9 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.663

Length

330 amino acids

Sequence
(BLAST)

001: MEEPSMGRIP CCEKDNVKRG QWTPEEDNKL SSYIAQHGTR NWRLIPKNAG LQRCGKSCRL RWTNYLRPDL KHGQFSDAEE QTIVKLHSVV GNRWSLIAAQ
101: LPGRTDNDVK NHWNTKLKKK LSGMGIDPVT HKPFSHLMAE IATTLAPPQV AHLAEAALGC FKDEMLHLLT KKRIDFQFQQ SGAAPGNTAA TYTANKQDEK
201: DDTIEKIKLG LSRAMQEPAM LPLNKPWDSN GATSANFAGA CSGFPISVPG FQYGPSPFGN EGDGSPWSQS MCTGSTCTAG DQQGRLHEKL EDENGEETGG
301: GKEIRHSSSI FNSDCVLWDL PSDDLMDPMV

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.