Factsheet for HORVU2Hr1G081720.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64987	Canola	nucleus	50.0	65.27
Zm00001d025664_P001	Maize	nucleus	62.5	54.78
TraesCS2D01G331700.1	Wheat	nucleus	60.58	53.69
TraesCS2B01G351000.1	Wheat	nucleus	60.58	53.69
TraesCS2A01G331200.1	Wheat	nucleus	60.58	53.69
VIT_19s0015g01280.t01	Wine grape	nucleus	55.77	52.73
EES12341	Sorghum	nucleus	61.86	52.02
KRG98401	Soybean	nucleus	52.88	50.61
KRH46482	Soybean	nucleus	52.56	50.46
Bra035604.1-P	Field mustard	nucleus	50.32	49.06
AT5G56110.1	Thale cress	nucleus	49.68	48.44
CDY17391	Canola	nucleus	49.68	48.44
Bra002847.1-P	Field mustard	nucleus	49.36	48.12
CDY57424	Canola	nucleus	49.36	48.12
PGSC0003DMT400022402	Potato	nucleus	50.0	47.56
Solyc10g005760.1.1	Tomato	nucleus	50.0	46.43
HORVU4Hr1G055640.1	Barley	cytosol	5.45	39.53
HORVU3Hr1G068550.1	Barley	nucleus	23.72	33.95
HORVU4Hr1G055680.1	Barley	nucleus	32.37	33.44
HORVU4Hr1G087730.1	Barley	nucleus	23.08	33.03
HORVU7Hr1G096190.1	Barley	nucleus	26.6	31.92
HORVU3Hr1G019590.2	Barley	nucleus	25.32	29.37
HORVU5Hr1G063410.1	Barley	nucleus	27.56	28.57
HORVU5Hr1G098540.1	Barley	nucleus	27.56	27.65
HORVU1Hr1G061220.1	Barley	nucleus	27.88	27.44
HORVU1Hr1G051980.2	Barley	nucleus	21.47	27.13
HORVU2Hr1G010450.2	Barley	nucleus	26.28	23.36
HORVU1Hr1G045090.1	Barley	nucleus	22.44	23.33
HORVU6Hr1G083250.1	Barley	nucleus	26.28	22.59
HORVU3Hr1G063460.4	Barley	nucleus	17.95	18.01
HORVU1Hr1G084170.4	Barley	nucleus	13.14	12.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:21.8.1.1	UniProt:A0A287IMP8	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043
GO:GO:0030154	GO:GO:0043565	GO:GO:0048658	EnsemblPlantsGene:HORVU2Hr1G081720	EnsemblPlants:HORVU2Hr1G081720.2	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF653
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B46B758	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:+:592915566..592920770

Molecular Weight (calculated)

29816.6 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.515

Length

312 amino acids

Sequence
(BLAST)

001: MGRIPCCEKD NVKRGQWTPE EDNKLLSYIT QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGEF TDAEEQTIIK LHSVVGNRWS VIAAQLPGRT
101: DNDVKNHWNT KLKKKLSGMG IDPITHKSFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRPT DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXNDHDM DPLSDFMASS HLSESGALVG CPTSPLRAGV SPQGLWASPG WVAPPGELPE PIRHSRYIPG NSENLXXXXG RVQGGGLSSP KPSWTRFGGR
301: EALVGXXXXK PS

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.