Factsheet for HORVU6Hr1G083250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018319_P001	Maize	nucleus	23.42	94.44
TraesCS6A01G344700.1	Wheat	nucleus	93.94	93.42
TraesCS6D01G327300.1	Wheat	nucleus	93.66	93.15
TraesCS6B01G377400.1	Wheat	nucleus	93.11	92.86
EES05913	Sorghum	nucleus	69.15	62.28
Zm00001d052069_P001	Maize	nucleus	67.22	61.62
HORVU4Hr1G055640.1	Barley	cytosol	5.79	48.84
HORVU1Hr1G061220.1	Barley	nucleus	38.84	44.48
VIT_11s0052g01490.t01	Wine grape	nucleus	42.98	42.74
HORVU5Hr1G063410.1	Barley	nucleus	34.71	41.86
HORVU7Hr1G096190.1	Barley	nucleus	29.48	41.15
Os02t0786400-00	Rice	extracellular	48.48	40.37
CDY25898	Canola	nucleus	35.81	40.12
CDY11860	Canola	nucleus	36.91	40.12
AT5G57620.1	Thale cress	nucleus	36.64	39.94
HORVU3Hr1G068550.1	Barley	nucleus	23.97	39.91
Bra006811.1-P	Field mustard	nucleus	36.36	39.88
CDX88631	Canola	nucleus	36.36	39.88
Bra020428.1-P	Field mustard	nucleus	36.09	39.46
HORVU5Hr1G098540.1	Barley	nucleus	33.61	39.23
PGSC0003DMT400048261	Potato	nucleus	38.84	38.32
KRH18986	Soybean	nucleus	38.02	38.12
HORVU4Hr1G087730.1	Barley	nucleus	22.59	37.61
KRH02902	Soybean	nucleus	37.19	36.99
HORVU2Hr1G010450.2	Barley	nucleus	33.33	34.47
HORVU3Hr1G019590.2	Barley	nucleus	25.34	34.2
Solyc07g006750.2.1	Tomato	mitochondrion	39.39	33.73
HORVU4Hr1G055680.1	Barley	nucleus	25.34	30.46
HORVU1Hr1G051980.2	Barley	nucleus	19.28	28.34
HORVU2Hr1G081720.2	Barley	nucleus	22.59	26.28
HORVU1Hr1G045090.1	Barley	nucleus	20.66	25.0
HORVU3Hr1G063460.4	Barley	nucleus	21.21	24.76
HORVU1Hr1G084170.4	Barley	nucleus	13.77	15.53

Protein Annotations

EnsemblPlants:HORVU6Hr1G083250.1	EnsemblPlantsGene:HORVU6Hr1G083250	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF946	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000295CF93	UniProt:M0XB15	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:550913532..550916360

Molecular Weight (calculated)

38514.4 Da

IEP (calculated)

7.464

GRAVY (calculated)

-0.408

Length

363 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKKGPWSPE EDAKLKAYID ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGK RAPSRRLQRT NQDGPMPYSY LAAGGAGGGG SSSGVNANGT TAALSSSALE RIQLHMRLQG LYSAFGNAPP QWPKLEPPTD
201: AVAMTTVGHG HSLAAGAVVQ AEQQINPSAG ASYDTPAPGS FEERSSKLGF GSPAGESAGM ASTVEMSSGS MVGGSFGYGH VDELYDFLYN KQLAAAGAFQ
301: GGVPPLPELQ CPDGGAVVGA DEKFSTWMAS TSCDHYVPTT GGQLQLQGGN SMSLQDFVLG YDQ

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.