CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75617	Sorghum	nucleus	77.92	100.0
Zm00001d018319_P001	Maize	nucleus	21.84	97.78
Zm00001d052069_P001	Maize	nucleus	80.4	81.82
TraesCS6B01G377400.1	Wheat	nucleus	64.02	70.88
TraesCS6D01G327300.1	Wheat	nucleus	63.52	70.14
TraesCS6A01G344700.1	Wheat	nucleus	62.78	69.32
HORVU6Hr1G083250.1	Barley	nucleus	62.28	69.15
EES14801	Sorghum	nucleus	35.73	45.0
Os02t0786400-00	Rice	extracellular	47.15	43.58
VIT_11s0052g01490.t01	Wine grape	nucleus	39.21	43.29
EES00143	Sorghum	nucleus	24.57	40.41
EER90818	Sorghum	nucleus	32.51	40.06
CDY11860	Canola	nucleus	32.75	39.52
CDY25898	Canola	nucleus	31.76	39.51
Bra006811.1-P	Field mustard	nucleus	32.26	39.27
CDX88631	Canola	nucleus	32.26	39.27
AT5G57620.1	Thale cress	nucleus	32.26	39.04
PGSC0003DMT400048261	Potato	nucleus	35.24	38.59
Bra020428.1-P	Field mustard	nucleus	31.76	38.55
EES10507	Sorghum	nucleus	33.75	38.53
EES18637	Sorghum	nucleus	27.3	38.06
KRH18986	Soybean	nucleus	33.99	37.85
EER98942	Sorghum	nucleus	34.24	37.4
KRH02902	Soybean	nucleus	33.25	36.71
OQU79721	Sorghum	nucleus	21.84	36.21
OQU87345	Sorghum	nucleus	29.28	35.44
Solyc07g006750.2.1	Tomato	mitochondrion	35.73	33.96
KXG35154	Sorghum	nucleus	26.8	33.75
OQU92760	Sorghum	nucleus	25.81	31.71
EES01384	Sorghum	nucleus	23.33	29.56
KXG38237	Sorghum	nucleus	18.61	29.3
EES12341	Sorghum	nucleus	22.58	24.53

Protein Annotations

EnsemblPlants:EES05913	EnsemblPlantsGene:SORBI_3004G322800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	ProteinID:EES05913	ProteinID:EES05913.2	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0007F2B2B9	UniProt:C5XU90	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr4:+:65764284..65767904

Molecular Weight (calculated)

42524.7 Da

IEP (calculated)

6.669

GRAVY (calculated)

-0.377

Length

403 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGK RAPSRRARAN QDPYLAAGAG NMCSTSGGVN NNSAAAATST QALSASALER IQLHMRLQGI YGAFGCSADA NDDSNAAAVA
201: AAPQWPKLEA LLQANRLLPG SLPADAMATT VSVQQHHQHL VDHQSLAAGA SDAAAVEGEQ QLSSAGGAAN YMAPGGFFER PKLGFYSPSA EAEAPAGGGV
301: EMNSGAPMVG GGYGGAGFGA HHQHDELYDF LYSKYGSVGE LAHDGHVPTL PELQCPDGAA VVGADEKFSA WTASACDYGA AGGHQIQQGN SIMHDYVLGG
401: YDQ

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.