CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034207_P001	Maize	nucleus	87.16	90.76
Zm00001d013164_P002	Maize	nucleus	84.4	78.86
TraesCS5D01G415800.1	Wheat	nucleus	71.87	75.56
TraesCS5B01G410500.1	Wheat	nucleus	71.25	74.92
TraesCS5A01G405800.1	Wheat	nucleus	71.25	74.92
Os03t0771100-01	Rice	nucleus	73.39	74.77
HORVU5Hr1G098540.1	Barley	nucleus	70.95	74.6
GSMUA_Achr5P21840_001	Banana	nucleus	32.11	50.72
GSMUA_Achr4P28090_001	Banana	nucleus	34.25	49.56
GSMUA_Achr10P...	Banana	nucleus	40.06	48.88
PGSC0003DMT400012702	Potato	nucleus	48.62	48.33
Solyc04g077260.2.1	Tomato	nucleus	47.4	47.69
GSMUA_Achr9P09790_001	Banana	nucleus	36.39	45.25
GSMUA_Achr5P01930_001	Banana	nucleus	38.84	45.2
GSMUA_Achr4P32240_001	Banana	nucleus	38.53	45.16
EES00143	Sorghum	nucleus	31.5	42.04
GSMUA_Achr7P08150_001	Banana	nucleus	32.72	41.8
Bra011785.1-P	Field mustard	nucleus	38.23	40.98
CDX69328	Canola	nucleus	37.61	40.33
GSMUA_Achr6P31740_001	Banana	nucleus	40.98	40.0
AT4G37780.1	Thale cress	nucleus	37.0	39.67
KRH28317	Soybean	nucleus	41.28	38.79
KRH77168	Soybean	nucleus	40.67	38.33
EES18637	Sorghum	nucleus	33.64	38.06
Solyc02g091980.1.1	Tomato	nucleus	38.23	37.88
KRH04372	Soybean	nucleus	39.14	37.76
PGSC0003DMT400055148	Potato	nucleus	37.92	37.58
EES14801	Sorghum	nucleus	36.39	37.19
GSMUA_Achr6P01850_001	Banana	nucleus	37.61	36.94
OQU79721	Sorghum	nucleus	27.22	36.63
KRH58168	Soybean	nucleus	37.31	36.42
OQU87345	Sorghum	nucleus	34.86	34.23
KXG35154	Sorghum	nucleus	33.03	33.75
EES10507	Sorghum	nucleus	35.47	32.86
EES05913	Sorghum	nucleus	40.06	32.51
EER98942	Sorghum	nucleus	34.56	30.62
EES01384	Sorghum	nucleus	28.75	29.56
KXG38237	Sorghum	nucleus	22.94	29.3
OQU92760	Sorghum	nucleus	28.13	28.05
EES12341	Sorghum	nucleus	28.44	25.07
OQU75617	Sorghum	nucleus	15.6	16.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8084185	UniProt:C5WZ77	EnsemblPlants:EER90818	ProteinID:EER90818
ProteinID:EER90818.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF928	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3001G075300	SUPFAM:SSF46689	UniParc:UPI0001A82284	RefSeq:XP_002463820.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:5735609..5737406

Molecular Weight (calculated)

35573.5 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.466

Length

327 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLFGK QSRKDQRQHQ FMRQQAAAAN DGMMKQEAAA TGDAAGSSSM AVASYNWHHQ AMAAMPVQPI PGSIMEGHRP GDEVDESIRK
201: LLYKLGGAGP FTALSVPQCV PPMYEGSPGL MPPPSSCPAV DAGTSLDEGG VQGSSVLPAL ELDQGFHFNQ VKLDGLESFF GIGTDQSMRW SEVSPLICPN
301: NNVAASTSQG MQQYCLAVDE PGNLGMK

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.