CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004126_P001	Maize	nucleus	80.74	79.17
HORVU2Hr1G010450.2	Barley	nucleus	60.62	60.97
TraesCS2D01G068000.1	Wheat	nucleus	59.77	60.46
TraesCS2A01G069300.1	Wheat	nucleus	59.49	60.34
TraesCS2B01G082400.1	Wheat	nucleus	59.21	59.54
Solyc06g074910.2.1	Tomato	nucleus	32.01	37.42
EES14801	Sorghum	nucleus	32.86	36.25
EES00143	Sorghum	nucleus	24.93	35.92
EER90818	Sorghum	nucleus	32.86	35.47
OQU79721	Sorghum	nucleus	24.36	35.39
Solyc06g074920.1.1	Tomato	nucleus	28.9	34.58
EES18637	Sorghum	nucleus	28.05	34.26
OQU87345	Sorghum	nucleus	32.01	33.93
EES05913	Sorghum	nucleus	38.53	33.75
KXG35154	Sorghum	nucleus	30.03	33.12
EER98942	Sorghum	nucleus	32.86	31.44
EES01384	Sorghum	nucleus	25.5	28.3
KXG38237	Sorghum	nucleus	20.4	28.12
OQU92760	Sorghum	nucleus	25.21	27.13
EES12341	Sorghum	nucleus	23.23	22.1
OQU75617	Sorghum	nucleus	17.28	19.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8085743	UniProt:C5YD70	EnsemblPlants:EES10507	ProteinID:EES10507
ProteinID:EES10507.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF687	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3006G030200	SUPFAM:SSF46689	UniParc:UPI0001A86B23	RefSeq:XP_002446179.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:6400999..6404761

Molecular Weight (calculated)

38573.2 Da

IEP (calculated)

8.227

GRAVY (calculated)

-0.741

Length

353 amino acids

Sequence
(BLAST)

001: MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNIKHGE FTENEDRVIC SMYASIGSRW SIIASQLPGR
101: TDNDIKNYWN TKLKKKLLGS TAAPHPHRAP RQHHHHHRPG LNLMLQQHTS SPSLPQATYN SFFSGAGGAL HHHDPIISAL ALPPPHHQDY MLSSGAGLGI
201: PTNAPSSSLL HAQQQFQQQH HHQQVVKEES GSMIVFGSDQ QSCSSSDGGG AHSHSQTHAQ FGHGHGKDLS FDGYLFGYNN GGSMEHDNRL LLHQLQDGHQ
301: QVAPVEYNYE EIKQLLMSTT AAGSLHGHGG HEDGGGMEGF GGGGGSQGKV TMM

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.