Factsheet for Solyc06g074920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074910.2.1	Tomato	nucleus	86.78	84.77
Solyc08g065910.1.1	Tomato	nucleus	28.47	39.44
Solyc09g008250.2.1	Tomato	nucleus	35.59	35.47
Solyc11g069030.1.1	Tomato	nucleus	37.29	34.92
Solyc12g008670.1.1	Tomato	nucleus	30.85	32.27
Solyc04g077260.2.1	Tomato	nucleus	34.92	31.69
Solyc03g059200.1.1	Tomato	nucleus	26.44	29.66
Solyc02g091980.1.1	Tomato	nucleus	32.88	29.39
EES10507	Sorghum	nucleus	34.58	28.9
TraesCS2A01G069300.1	Wheat	nucleus	33.9	28.74
TraesCS2D01G068000.1	Wheat	nucleus	33.9	28.65
Zm00001d004126_P001	Maize	nucleus	34.92	28.61
TraesCS2B01G082400.1	Wheat	nucleus	33.9	28.49
HORVU2Hr1G010450.2	Barley	nucleus	33.9	28.49
Solyc07g006750.2.1	Tomato	mitochondrion	33.22	23.11
Solyc10g005760.1.1	Tomato	nucleus	24.75	21.73
Solyc03g113530.2.1	Tomato	nucleus	24.07	20.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4C9K8	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF506
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g074920.1	EnsemblPlants:Solyc06g074920.1.1	UniParc:UPI00027667A0
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:46422576..46424992

Molecular Weight (calculated)

33875.5 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.715

Length

295 amino acids

Sequence
(BLAST)

001: MKRSPCCDKI NVKKGPWSPE EDAKLKEFIE KYGNGGNWIA LPQKVGLMRC GKSCRLRWLN YLRPNIRHGN FSQEEDRVTC SLYARIGSRW SFIAAQLSER
101: TDNNIKNYWN TKLKKKFIGF IHSSSNILYH PTSTLQTTFQ PQTQSQASIS SIFRDSYIEP IPLVQPNFTY NNNNMMNFQL GTNNQYSYNF HDQSLVYPMQ
201: AISSCSSSDG LSCNQISYGN EEIMCQIPFE ETQKFTLDSY CTTWADHQKA NGYFGNNFQS SQLQYDDHTN IEEIKELISS SSSNGNGCNN VGYWG

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.