Factsheet for Solyc02g091980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055148	Potato	nucleus	96.97	96.97
Solyc08g065910.1.1	Tomato	nucleus	27.88	43.19
GSMUA_Achr9P09790_001	Banana	nucleus	33.64	42.21
HORVU5Hr1G098540.1	Barley	nucleus	38.48	40.84
TraesCS5D01G415800.1	Wheat	nucleus	38.48	40.84
TraesCS5B01G410500.1	Wheat	nucleus	38.48	40.84
TraesCS5A01G405800.1	Wheat	nucleus	38.18	40.51
Os03t0771100-01	Rice	nucleus	39.09	40.19
Solyc04g077260.2.1	Tomato	nucleus	38.48	39.08
KRH04372	Soybean	nucleus	39.7	38.64
Zm00001d034207_P001	Maize	nucleus	36.67	38.53
KRH58168	Soybean	nucleus	39.09	38.51
EER90818	Sorghum	nucleus	37.88	38.23
Solyc09g008250.2.1	Tomato	nucleus	33.33	37.16
Solyc12g008670.1.1	Tomato	nucleus	31.52	36.88
Zm00001d013164_P002	Maize	nucleus	38.79	36.57
Solyc06g074910.2.1	Tomato	nucleus	33.33	36.42
Solyc11g069030.1.1	Tomato	nucleus	32.73	34.29
Solyc03g059200.1.1	Tomato	nucleus	27.27	34.22
Solyc06g074920.1.1	Tomato	nucleus	29.39	32.88
Solyc07g006750.2.1	Tomato	mitochondrion	37.58	29.25
Solyc10g005760.1.1	Tomato	nucleus	26.97	26.49
Solyc03g113530.2.1	Tomato	nucleus	25.45	23.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BCZ6	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g091980.1	EnsemblPlants:Solyc02g091980.1.1	UniParc:UPI0002767D54
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:53191110..53192394

Molecular Weight (calculated)

37563.9 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.713

Length

330 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDSKLKAYIE QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN YLRPNIKHGE FTDEEDNIIC TLYMSIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLLC NKQRKDQRPR TGSYINHNKL EMMNEHENFF ATHQTINNAY SWPSQQILFS TLIAPQNHDL AESSSANSHN FQYSSTDQVY
201: FSQDQLCQIS STNQLPSMNL VNGNTCNVIS NGYYPSNGVV INNGLQEYNN YNSVGLGHDA LNSTSTTHSQ QVDKSVLEMV NSSTISTTSQ DQSTSWEELS
301: PLVNYPPSVF ETVSPYYVFE EQRYMGLLKQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.