Factsheet for Solyc11g069030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020979	Potato	nucleus	59.37	93.97
Solyc09g008250.2.1	Tomato	nucleus	41.9	44.59
Solyc08g065910.1.1	Tomato	nucleus	27.94	41.31
Solyc06g074910.2.1	Tomato	nucleus	39.05	40.73
KRH41459	Soybean	nucleus	24.13	38.38
Solyc06g074920.1.1	Tomato	nucleus	34.92	37.29
Solyc12g008670.1.1	Tomato	nucleus	32.06	35.82
Solyc03g059200.1.1	Tomato	nucleus	29.52	35.36
Solyc04g077260.2.1	Tomato	nucleus	35.87	34.77
Solyc02g091980.1.1	Tomato	nucleus	34.29	32.73
Solyc07g006750.2.1	Tomato	mitochondrion	35.87	26.65
Solyc10g005760.1.1	Tomato	nucleus	26.98	25.3
Solyc03g113530.2.1	Tomato	nucleus	24.13	21.41
OQU75617	Sorghum	nucleus	12.06	12.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EMBL:AF426174	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF506
UniProt:Q8W1R8	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc11g069030.1	EnsemblPlants:Solyc11g069030.1.1
UniParc:UPI000009FD0D	SEG:seg	:	:	:	:

Description

Blind [Source:UniProtKB/TrEMBL;Acc:Q8W1R8]

Coordinates

chr11:+:53603245..53604784

Molecular Weight (calculated)

35520.4 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.750

Length

315 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KFGTAGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNIKHGD FSDDEDRVIC NLYANIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLMGL IIPNNNSSSS YNNNNNNYQK KLPYFPSTSL HQAQQNLGPF ITGPEQPIII PAAQQNNLFT NNNNNLMMIA NNLQNYPNFG
201: ATNYNLQNYP NFGEVASCSS SDGSQMSFGT NKDIINIKRE EIMSFGGHHD GAIYEEINNN QQFNFGYFGN TMQEIATSCC TNGNSGSTTN SSNNFLLYNN
301: DENCNKSNEI GMFYY

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.