Factsheet for Solyc03g059200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022009	Potato	nucleus	93.54	83.96
AT3G28470.1	Thale cress	nucleus	56.27	46.69
Os03t0296000-00	Rice	nucleus	18.25	46.6
Bra025337.1-P	Field mustard	nucleus	57.03	46.44
CDX86430	Canola	nucleus	57.03	46.44
KRG93460	Soybean	nucleus	57.79	44.06
KRH18536	Soybean	endoplasmic reticulum	58.94	41.33
TraesCS4A01G113000.1	Wheat	nucleus	46.39	39.74
TraesCS4D01G192400.1	Wheat	nucleus	46.39	39.61
TraesCS4B01G191200.1	Wheat	nucleus	46.39	39.61
HORVU4Hr1G055680.1	Barley	nucleus	44.87	39.07
GSMUA_Achr3P10060_001	Banana	nucleus	46.77	38.44
Zm00001d028777_P001	Maize	nucleus	46.39	38.24
OQU92760	Sorghum	nucleus	46.01	36.89
VIT_14s0066g02180.t01	Wine grape	nucleus	60.08	36.24
Solyc08g065910.1.1	Tomato	nucleus	29.28	36.15
Solyc10g005760.1.1	Tomato	nucleus	41.06	32.14
Solyc09g008250.2.1	Tomato	nucleus	34.22	30.41
Solyc12g008670.1.1	Tomato	nucleus	32.32	30.14
Solyc11g069030.1.1	Tomato	nucleus	35.36	29.52
Solyc03g113530.2.1	Tomato	nucleus	37.64	27.89
Solyc06g074910.2.1	Tomato	nucleus	31.94	27.81
Solyc02g091980.1.1	Tomato	nucleus	34.22	27.27
Solyc04g077260.2.1	Tomato	nucleus	33.46	27.08
Solyc06g074920.1.1	Tomato	nucleus	29.66	26.44
CDX85201	Canola	endoplasmic reticulum, vacuole	56.27	22.63
Solyc07g006750.2.1	Tomato	mitochondrion	34.98	21.7

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000003	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	GO:GO:0048443	GO:GO:0048658	GO:GO:0052545	GO:GO:0055046
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4BGW7	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g059200.1
EnsemblPlants:Solyc03g059200.1.1	UniParc:UPI0002768EC2	SEG:seg	:	:	:

Description

Transcription factor MYB35 [Source:Projected from Arabidopsis thaliana (AT3G28470) UniProtKB/Swiss-Prot;Acc:Q9LSI7]

Coordinates

chr3:-:27907322..27908295

Molecular Weight (calculated)

29939.5 Da

IEP (calculated)

7.234

GRAVY (calculated)

-0.552

Length

263 amino acids

Sequence
(BLAST)

001: MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY LRPDLKHDNF TPQEEDCILE LHKTIGSRWS LIAKQLPGRT
101: DNDVKNYWNT KLKKKLVNMG IDPVTHKPFA QVFAEYGKIS GLPIQSPTNH IQFFNNNINI FSNETTTPHH PLQQNYSTQI YTRETLQTLC FTEQSHLPSS
201: SSTSWNDDFI LGDPLTPGTF LSNHPVEQPT CSPAMDSFVD TILARDKQML MDFPPLLDVY LDY

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.