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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g074920.1.1 Tomato nucleus 84.77 86.78
Solyc08g065910.1.1 Tomato nucleus 28.81 40.85
Solyc09g008250.2.1 Tomato nucleus 38.41 39.19
Solyc11g069030.1.1 Tomato nucleus 40.73 39.05
Solyc04g077260.2.1 Tomato nucleus 38.74 36.0
Solyc12g008670.1.1 Tomato nucleus 32.12 34.4
Solyc02g091980.1.1 Tomato nucleus 36.42 33.33
TraesCS2A01G069300.1 Wheat nucleus 37.42 32.47
TraesCS2B01G082400.1 Wheat nucleus 37.42 32.19
TraesCS2D01G068000.1 Wheat nucleus 37.09 32.09
EES10507 Sorghum nucleus 37.42 32.01
Solyc03g059200.1.1 Tomato nucleus 27.81 31.94
HORVU2Hr1G010450.2 Barley nucleus 37.09 31.91
Zm00001d004126_P001 Maize nucleus 37.75 31.67
Solyc07g006750.2.1 Tomato mitochondrion 35.43 25.24
Solyc10g005760.1.1 Tomato nucleus 27.81 25.0
Solyc03g113530.2.1 Tomato nucleus 25.83 21.97
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1GO:GO:0000981GO:GO:0001135GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006357GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0030154GO:GO:0043565GO:GO:0044212InterPro:Homeobox-like_sfInterPro:IPR017930
UniProt:K4C9K7InterPro:Myb_domPFAM:PF00249PFscan:PS51294PANTHER:PTHR10641PANTHER:PTHR10641:SF506
InterPro:SANT/MybSMART:SM00717SUPFAM:SSF46689EnsemblPlantsGene:Solyc06g074910.2EnsemblPlants:Solyc06g074910.2.1UniParc:UPI000276679F
SEG:seg:::::
Description
No Description!
Coordinates
chr6:+:46414136..46416296
Molecular Weight (calculated)
34404.3 Da
IEP (calculated)
7.883
GRAVY (calculated)
-0.747
Length
302 amino acids
Sequence
(BLAST)
001: MGRAPCCDKN NVKRGPWSPE EDAKLKEFIE KYGTGGNWIA LPLKAGLKRC GKSCRLRWLN YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLMGF IQSSSNINQR TKSPNLLFPP TSTLQTTFQS QSQASISNLL RDSYVEPIPL VQPNFMYNNN NMMNFQLGTN NQHSYNFHDQ
201: SLMNPMQTIS SCSSSDGLSC KQISYGNEEM MCQIPFEETQ KFTLDNYCTT WADHQKTNGY FGNNFQSSQF QYDDHTNIEE IKELISSSSS NGNGCNNVGY
301: WG
Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV
Arabidopsis Description
MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.