Factsheet for Solyc12g008670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000932	Potato	nucleus	91.49	89.27
KRH49024	Soybean	nucleus	43.26	46.92
KRH60169	Soybean	nucleus	41.13	46.77
KRH74186	Soybean	nucleus	42.91	46.36
Solyc08g065910.1.1	Tomato	nucleus	31.56	41.78
VIT_11s0016g02780.t01	Wine grape	nucleus	37.59	37.19
Solyc09g008250.2.1	Tomato	nucleus	34.75	33.11
Solyc03g059200.1.1	Tomato	nucleus	30.14	32.32
Solyc06g074910.2.1	Tomato	nucleus	34.4	32.12
Solyc11g069030.1.1	Tomato	nucleus	35.82	32.06
Solyc02g091980.1.1	Tomato	nucleus	36.88	31.52
Solyc06g074920.1.1	Tomato	nucleus	32.27	30.85
Solyc04g077260.2.1	Tomato	nucleus	35.11	30.46
Solyc10g005760.1.1	Tomato	nucleus	30.85	25.89
Solyc07g006750.2.1	Tomato	mitochondrion	37.23	24.76
Solyc03g113530.2.1	Tomato	nucleus	25.53	20.28

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4DBV5	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF694
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc12g008670.1	EnsemblPlants:Solyc12g008670.1.1	UniParc:UPI0002769579
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:2049011..2050274

Molecular Weight (calculated)

32121.3 Da

IEP (calculated)

5.691

GRAVY (calculated)

-0.771

Length

282 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDNILKNYLE KNGTSGNWIS LPQKAGLRRC GKSCRLRWLN YLRPDIKHGG FTEEEDNIIL TLYRQIGSRW SVIAANLSGR
101: TDNDVKNHWN TKLKKKHLAA QNNNLINIGY NFTNNINSSD LNHNYSRNYY GKLDYSNTFT SHMDPNVTNC DQFPLPTLME IQGNDATIQE DGSLDSCQIL
201: QKCVTFEEIS MCPTMFSKST INTDRNYMNS SSGISSSSSS YYEDILENGF DFQENDVGGV DPNSSYYNNI LEIDQLFKGF EN

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.